Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C11
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   158   3e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   153   1e-38
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.37 
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   3.4  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   3.4  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.5  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    25   6.0  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   7.9  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  158 bits (384), Expect = 3e-40
 Identities = 70/98 (71%), Positives = 84/98 (85%)
 Frame = -3

Query: 354 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 175
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 174 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 61
            + +PKLY KL YCVSCAIHS+VVR RS++ RRIRTPP
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPP 98


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  153 bits (370), Expect = 1e-38
 Identities = 67/98 (68%), Positives = 83/98 (84%)
 Frame = -3

Query: 354 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 175
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 174 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 61
            + +PK+Y KL YCVSCAIH++VVR RS++ RRIRTPP
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPP 98


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -3

Query: 273 RCVPKDKAIKKFVIRNIVEAAAVRDI 196
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 267 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 88
           +PKDKA++    RN  +  A   I DA         KL A+L   V     SK  +  SK
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDA---------KLLARLER-VRAWKESKAKQEASK 216

Query: 87  K-DRRIRTPPQ 58
           K + ++ T PQ
Sbjct: 217 KEEHKLNTKPQ 227


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 214 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 333
           + +DV + +L + + L   P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 298 FNVTTSMLGASSITAL---TSHVSNLRSGEQ 381
           FN+ TS   +SS+T+    +SH+SN  + ++
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISNFTNSQK 130


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 112 QSCQEQIEERQKNPYSSTRV 53
           Q CQ  +E+ ++NP S+T V
Sbjct: 103 QGCQRVLEKGKRNPESATNV 122


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +1

Query: 193 VNISDRRRFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLRS 372
           +N   +R+   +PN   FD L  + + R   +++G N++     +S   +  + ++N  S
Sbjct: 472 LNNFQQRKLTPLPNSMSFDSLNEFESERNTPSTYGQNISPLPQFSSPSLSSDAFLTNSNS 531

Query: 373 GEQRTAEKQ 399
            E      Q
Sbjct: 532 SESALVHMQ 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,523
Number of Sequences: 5004
Number of extensions: 26815
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)