Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_C10
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 31 0.27
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 30 0.47
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.9
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 1.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 3.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.4
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 4.4
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 4.4
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce... 26 5.8
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 26 5.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 5.8
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 5.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 7.7
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 7.7
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 26 7.7
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/69 (23%), Positives = 37/69 (53%)
Frame = -2
Query: 566 TSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSS 387
T+ + +T + +S S + ++ + +P +R ++P SSS P + ++ ++ N
Sbjct: 174 TAVKNVTGENILSASSSEENLNSNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCK 233
Query: 386 IESTMSLPN 360
++S SLP+
Sbjct: 234 LKSHNSLPS 242
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = -1
Query: 615 TAGVAQGRHDPEG----GADNVTKNADSIERHQPKVSGRYRSPRELEQSSLQIEARAGQV 448
+AG+ QGR G D + KN DSI PKV + + S + + ++
Sbjct: 104 SAGIGQGRAFKLGWIKKDGDKLVKNTDSITDETPKVLSEIKEHGTISDSKTLTDLKKRKL 163
Query: 447 VVRN 436
V RN
Sbjct: 164 VERN 167
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = -2
Query: 584 QKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKL----APVRSSSETQPGKKT 417
+K PT QR + + A I P+SSN + + A +S SE P KK
Sbjct: 1258 RKPRPTKRQRQIMKQVAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSP-KKN 1316
Query: 416 ITLRKTKNSSIESTMSL 366
T N+ ES +SL
Sbjct: 1317 GTNISDANNKNESHVSL 1333
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.9
Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Frame = -2
Query: 707 PPADDVTSSLAHLRIIISLLNTNKMIAIEAEQQALPKDDMIQKAE-PTTSQRTLTRSSAI 531
P + + +S L + ++L ++ + + +L D + + + S T + ++
Sbjct: 130 PSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSV 189
Query: 530 SQKSVDVI--VHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSLPNQ 357
S S P S+++ S SSS + T+T SSI ST S +
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSS 249
Query: 356 KS 351
S
Sbjct: 250 TS 251
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 310 TAFWCRSPPCFFSKDFWFGRLIVDSIDEFFVFLKVIVFLPGWVSDDDLTGAS 465
T++W S P F S FWF L+ + FF+F V L +S +T S
Sbjct: 45 TSYWFSSGP-FISLSFWFLSLVRGFVCFFFMF-PYFVMLKSRMSTQKVTKQS 94
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.5
Identities = 23/105 (21%), Positives = 42/105 (40%)
Frame = -2
Query: 578 AEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKT 399
+ P++S T T S + S S SS++ S + SSS + + + +
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197
Query: 398 KNSSIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQTSIT 264
+SS S+ S+P S H + + S ++ + IT
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -2
Query: 602 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSN-NPLYRSK---LAPVRSSSET 435
P DD+ +++ +LT I S D +H E++ + LY S+ + V S S
Sbjct: 379 PSDDVENQSDQALEVLSLTNPPKIDNASADTTLHKETNKIDKLYVSENKAESAVASESSL 438
Query: 434 QPGKKTITLRKTKNSSIESTMSLP 363
G + +N +S+ S P
Sbjct: 439 SEGTLALKAPAPENKPEKSSTSKP 462
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 468 EARAGQVVVRNPTGQEDDYFEENKKFVNRINDEPSKPEVF 349
E++ + VRN QED++ E + V ++++ K +F
Sbjct: 1064 ESKNEETFVRNDVAQEDNFIELSSNEVRNVSNDEHKHTLF 1103
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 572 PTTSQRTLTRSSA--ISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKT 399
P++S L+ SSA IS S + S +P S + + SSS Q + +L +
Sbjct: 42 PSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSS 101
Query: 398 KNSSIESTMS 369
++++ S+ S
Sbjct: 102 SSATLTSSSS 111
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.6 bits (56), Expect = 4.4
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = -2
Query: 641 NKMIAIEAEQQALP-KDDMIQKAEPTT-----SQRTLTRSSAISQKSVDVIVHPESSNNP 480
++M A E E +P +DD QK E T RS S+++ + + S NP
Sbjct: 602 DEMQAFEDELAGVPNEDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSL--PSRKNP 659
Query: 479 LYRSKLAPVRSSSETQPGKKTITLRKTKNSSIEST 375
+ E + G+K RK K S +E+T
Sbjct: 660 FVSDSAVLKVNKPEMKEGQKKAEARKKKESPLEAT 694
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = -2
Query: 602 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGK 423
P D + ++ R L++ +A+S+ + + P+S ++PL ++P SS+++
Sbjct: 88 PSDVFTLEKPIASTHRWLSKLTALSKSTNSTLSTPKSFHSPLQSRGISP--SSAQSSAAV 145
Query: 422 KTITLRKTKNSS 387
+ +K K +S
Sbjct: 146 SSSRKQKRKRTS 157
>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 582 EGGADNVTKNADSIERHQPKVSGRYRSPRELEQSSLQIEARAGQVVVRNPTGQEDDYFEE 403
EG D T + + +PK G + + E E+ + E R G R Q ++YF+
Sbjct: 52 EGEVDG-TLDPEMTHGTKPKEHGEFDTDDEEEEENPDAEFRWGYSARRRIRKQREEYFKN 110
Query: 402 NKK 394
K
Sbjct: 111 QDK 113
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.8
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = -2
Query: 698 DDVTSSLAHLRIIISL-------LNTNKMIAIEAEQQALPKDDMIQKAEPTTSQRTLTRS 540
DDV++ + HL + S+ L+ K+IA LP D + TT R + +S
Sbjct: 303 DDVSNLINHLDGVESVHELHIWQLSDVKLIATVHVCVTLPDDKGESYTKLTTDIRNVLQS 362
Query: 539 SAISQKSVDVIVHPESSNNPL 477
I DV + PE +N+PL
Sbjct: 363 FGI----YDVTIQPEFANHPL 379
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 347 EKKHGGLRHQKAVGAQSDITLTTQTSITDDRK-ALREALYQGIFHRHRRTIFAVGS 183
EK G+ H AV + ++ TQT +TD + L L H R I V S
Sbjct: 1633 EKDDSGIDHVTAVASHFNVWPDTQTVMTDAKSTTLASLLLLASLHNRRIHITNVSS 1688
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -2
Query: 596 DDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPV-RSSSETQPGKK 420
D M+ + ++S TL + + V + NP R+KLA + +T G+
Sbjct: 592 DYMLSLFKTSSSTLTLHSLEPLCEFCVSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRS 651
Query: 419 TITLRKTKNSSIESTMSLP 363
+ L + S + + LP
Sbjct: 652 ELLLDVVRTSKVATRWLLP 670
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -1
Query: 684 VSRPSAHYHFIIEHKQN---DRNRS*TAGVAQG 595
VSRPS Y +IE K+ + S TAG+ QG
Sbjct: 122 VSRPSPLYQRVIEAKERVVLENQFSKTAGIVQG 154
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 593 DMIQKAEPTTSQRTLTRSSAIS-QKSVDVIVHPESSNNP 480
+M+Q + T SQR ++ SS S KS + I P++ ++P
Sbjct: 165 NMLQSTKSTASQRRMSDSSTPSTTKSKEKIFSPKALSSP 203
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 738 PCPLLTSLTRPARRRCDLVSRPSAHYHFII 649
P P L+S T+ + +C L+ + + H+H II
Sbjct: 277 PLPELSSDTKVDQDKCALIKQCANHFHQII 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,527
Number of Sequences: 5004
Number of extensions: 57476
Number of successful extensions: 218
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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