Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_C10
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0516 + 21661696-21662490 32 0.66
05_03_0035 - 7592177-7592938 31 1.1
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533... 30 2.7
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 3.5
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 29 4.6
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 29 6.1
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 29 6.1
05_03_0119 - 8591659-8591877,8592347-8592347,8592540-8592628,859... 28 8.1
05_03_0033 - 7585267-7586028 28 8.1
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 28 8.1
>06_03_0516 + 21661696-21662490
Length = 264
Score = 31.9 bits (69), Expect = 0.66
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 572 APPSGSCRPWA---TPAVQLLLRSFCLCSIMK**CADGRETRSHRRRAGLVNDVNRGHGQ 742
+PPS S PW TP +L L ++ +G++ R RRR G RG G+
Sbjct: 68 SPPSLSTSPWTPRRTPPDGEILHLLHLYYLVL--ATEGQDKRQRRRRRGQQGGGGRGVGR 125
Query: 743 MRGEA 757
+ GEA
Sbjct: 126 VAGEA 130
>05_03_0035 - 7592177-7592938
Length = 253
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = -2
Query: 623 EAEQQALPKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSS 444
+ E ++ PK + K+EP ++ +S S+ + + P+S P Y K P +
Sbjct: 126 QPEAKSEPKSEPKPKSEPYAEPKSEPKSEPQSEPNPETKAEPKS--EPKYEPKSEP---T 180
Query: 443 SETQPGKKTITLRKTKNSSIESTMSLPNQKSLEK 342
+T+P ++ KT+ S P +KS K
Sbjct: 181 PQTEPRAESQPEPKTEPKSESKAEPKPERKSYSK 214
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 602 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAP-VRSSSETQPG 426
PKD+ + E ++ + ++ + S+ + PES P S P +S +++P
Sbjct: 79 PKDEPKPEPEAMSASQPESKPATYSESKPESKAEPESKPEPKAESTPQPEAKSEPKSEPK 138
Query: 425 KKTITLRKTKNSSIESTMSLPNQKS 351
K+ + K+ S PN ++
Sbjct: 139 PKSEPYAEPKSEPKSEPQSEPNPET 163
>03_06_0531 +
34552206-34552598,34552665-34552735,34553363-34553369,
34553603-34553736,34553834-34554245,34554655-34554753,
34555059-34555283,34555652-34556029,34556412-34556555,
34556832-34556927,34557228-34557547,34557965-34558040
Length = 784
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 428 GKKTITLRKTKNSSIESTMSLPNQKSLEKKHGGL-RHQK 315
G KTI KTK + E +++L N + E HG + +HQ+
Sbjct: 377 GGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQR 415
>02_05_0484 - 29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = -2
Query: 539 SAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSLPN 360
+ IS++ D H ES + R K ++ PG+K LR+T ++ +T + N
Sbjct: 977 ATISEQDEDSEAHSESVSLGGQRRKRRQTAAAVTQAPGEKRYNLRRTTVAN-AATAAQTN 1035
Query: 359 QKSLEKKHGGLRHQKAVGAQSDITLTTQTSITDDRKALREA 237
+K KK G + +A ++ T + T + A + A
Sbjct: 1036 KKKAAKK-GSKQTVEATADDTEGTSKAEEPATGSKGASQSA 1075
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 29.1 bits (62), Expect = 4.6
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Frame = -2
Query: 701 ADDVTSSLAHLRIIISLLNTNKMIAIEAEQQALPKDD-----MIQKAEPTTSQRTLTRSS 537
A D TSS+ + +S + IA+++ L KDD + KAE + L R
Sbjct: 495 ASDGTSSVLEPEVELSHDGKIREIAMDSADSDLKKDDANELLVALKAEKEELEAALNREQ 554
Query: 536 AISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSLPNQ 357
+ + + I E+ N L + +L VR + + K + E L +
Sbjct: 555 VQTIQLKEEIAEAEARNAELTK-ELQTVRGQLAAEQSR----CFKLEVDVAELRQKLQSM 609
Query: 356 KSLEKKHGGLRHQKAVGAQS 297
+LE++ LR QKA Q+
Sbjct: 610 DALEREVELLRRQKAASEQA 629
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 679 RDEVTSSAGGPR*RCQQGARPDARRGSYCRAXRXXRIRR 795
R E + S+GGP C+ RRGS CR +RR
Sbjct: 221 RVERSRSSGGPALPCRDFVAGRCRRGSNCRFPHEDGVRR 259
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 526 KSQWTL--SFTQRARTILFTDRSSRRSGRRQKPNRARRRLL 410
+S+W + ++A IL R R RR++P R RRRLL
Sbjct: 5 ESRWVVVNEKEEKATKILSRARQIHRRCRRRRPRRRRRRLL 45
>05_03_0119 -
8591659-8591877,8592347-8592347,8592540-8592628,
8593930-8594061
Length = 146
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -1
Query: 738 PCPLLTSLTRPARRRCDLVSRPSAHYHFIIEHKQNDRNRS*TAGVAQGRHDP 583
P PL +L+ PA L+ SA FI HK R S A V QG+ P
Sbjct: 12 PPPLPLALSSPATSPLRLLDMASAPSAFIGNHKVLGRLASQIAVVLQGKDKP 63
>05_03_0033 - 7585267-7586028
Length = 253
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 602 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAP-VRSSSETQPG 426
PKD+ + E ++ + ++ + S+ + PES P S P +S +++P
Sbjct: 79 PKDEPKPEPEAMSASQPESKPATYSESKPESKAEPESKPEPKAESTPQPEAKSEPKSEPK 138
Query: 425 KKTITLRKTKNSSIESTMSLPNQKS 351
K+ + K+ S PN ++
Sbjct: 139 PKSELYAEPKSEPKSEPQSEPNPET 163
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 616 SASIAIILFVFNNEMIMRRWARD 684
S I+LFV + +++RRW RD
Sbjct: 517 SVGFTILLFVMSGMLLLRRWKRD 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,730,723
Number of Sequences: 37544
Number of extensions: 413429
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -