Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C08
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.1  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.9  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   7.9  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 199 IINPVNWSQQELLLVDYMVIPKF 267
           I+ P NW+ +E++ +DY +I  F
Sbjct: 327 ILAPTNWAYREIIDIDYHIIENF 349


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 405 LRCLNNTEHRCCKDKDK-DVYLYHLLNYCYATF*EIAHSLCCTLS 274
           +R +  T  +  KD  K DV+     +  YA F  + H+LC T++
Sbjct: 243 IRIIKQTTDQVLKDSKKMDVHKQLHSSLFYARFSAVGHNLCPTIT 287


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 570 WAESSSTHLSNRKNVEKGLSHFVSSGIKYKGKLSHLSIIKIYT 442
           W     +H    KN +KG   ++ S   Y   L H+  +++YT
Sbjct: 41  WKSYWKSHYPFVKN-DKGKKKYILSMFPYPSGLLHIGHVRVYT 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,680
Number of Sequences: 5004
Number of extensions: 62779
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)