Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C08
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL117207-8|CAB60399.1|  362|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical
           protein K02E11.2 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = +1

Query: 160 IKIQIWLRDN**YIINPVNWSQQELLLVDYMVIPKFVIG*C-ATQ*MCNFLKSSIAIIQ* 336
           I +Q++   N  YII   N+++   L +   ++P F++  C AT  + N+ KS    +  
Sbjct: 86  IYMQLYPDKNLEYIIPLANFARTVCLFIAMYILPIFMVERCLATFLVANYEKSRKIWVS- 144

Query: 337 MVKVHIFIFILAAPVFCVI*TSQNLLCNIVLC*YFCVNFYYRQMGQFAFIFYS*TYKM 510
           ++ + IF  ++ A  F  I     ++ +++   +F VN       Q  F++ +  YK+
Sbjct: 145 LIILSIFHPLVFASAFAYIQCWLPVVFHVIS--FFVVNIIGYVGVQICFLYNTKRYKL 200


>AL117207-8|CAB60399.1|  362|Caenorhabditis elegans Hypothetical
           protein Y60A3A.14 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 362 LSLQHLCSVLFKHLRIYCATLFY 430
           +S+Q LCS+L   +R Y A+LFY
Sbjct: 336 MSIQILCSLLAFFIRFYLASLFY 358


>AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical
           protein T08D2.2 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 362 LSLQHLCSVLFKHLRIYCATLFY 430
           +S+Q LCS+L   +R Y A+LFY
Sbjct: 291 MSIQILCSLLAFFIRFYLASLFY 313


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 139 FSKQLMNQ-FVNYSEVHYHCMTVKNVN 62
           FS +L+N  F NYS  HY  + +KN++
Sbjct: 182 FSNKLINDNFSNYSAWHYRSIALKNIH 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,156
Number of Sequences: 27780
Number of extensions: 356824
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)