Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C07
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...   109   7e-25
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...   103   4e-23
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    42   1e-04
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    37   0.004
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    36   0.007
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    28   2.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.0  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   7.9  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   7.9  

>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score =  109 bits (261), Expect = 7e-25
 Identities = 52/113 (46%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
 Frame = -3

Query: 760 VXNNKVVVFMKGVPDAPRCGFSNAVVQIMRMHAVPYE---SHDVLSDENLRQGIKDYSNW 590
           V  + +V+FMKG P  P CGFS   +QI+ +  V  +   +++VLS++ LR+GIK++S+W
Sbjct: 33  VKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDW 92

Query: 589 PTIPQVFINGEFVGGCDIMLQMHQSGELIEELKKVGIKSALLTAEEAKQGEKK 431
           PTIPQ++INGEFVGG DI+  MH+SGEL + LK++      L  E+ K  E++
Sbjct: 93  PTIPQLYINGEFVGGSDILASMHKSGELHKILKEIN----ALAPEQPKDSEEE 141


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score =  103 bits (246), Expect = 4e-23
 Identities = 48/118 (40%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = -3

Query: 844 SFQAFNTTXKISCRAFS-EAGINDXIXXIVXNNKVVVFMKGVPDAPRCGFSNAVVQIMRM 668
           S Q  NTT   S      ++ +N+ +  +   + V++F+KG P  P CGFS  +V ++R 
Sbjct: 125 SVQTTNTTSNTSKAPNGLDSELNERLSTLTNAHNVMLFLKGTPSEPACGFSRKLVGLLRE 184

Query: 667 HAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEEL 494
             V Y   ++L+D+++RQG+K +S+WPT PQ++I GEFVGG DI+ +M ++GEL E L
Sbjct: 185 QNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
 Frame = -3

Query: 760 VXNNKVVVFMKGVPDAPRCGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNW 590
           + NN V VF K       C F  A    +  ++ PY+++++   EN   ++  + + +  
Sbjct: 13  ISNNPVTVFSKSF-----CPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67

Query: 589 PTIPQVFINGEFVGGCDIMLQMHQSG---ELIEELKK 488
            T+P +F   +F+GG   + ++  SG   ++I ELK+
Sbjct: 68  STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMIAELKE 104


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 22/95 (23%), Positives = 44/95 (46%)
 Frame = -3

Query: 790 AGINDXIXXIVXNNKVVVFMKGVPDAPRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQG 611
           + +   +   V +N VVVF K     P C  +  V+   ++ A  Y+   + + + ++  
Sbjct: 2   SSVESFVDSAVADNDVVVFAKSY--CPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSY 59

Query: 610 IKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGEL 506
           +   +   T+P +FI+ + VGG      + + GEL
Sbjct: 60  LLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGEL 94


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = -3

Query: 763 IVXNNKVVVFMKGVPDAPRCGFSNA----VVQIMRMH--AVPYESHDVLSDENLRQGIKD 602
           +   N V++F +     P C +S A    + + +R+   AV  E  D    + LR  +  
Sbjct: 62  VFLENPVIIFSR-----PGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSS 116

Query: 601 YSNWPTIPQVFINGEFVGGCDIMLQMHQSGEL 506
            S+  T+P +F+ G  +GG D +  ++Q  +L
Sbjct: 117 ISDISTMPNIFVGGHSIGGSDSVRALYQEEKL 148


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -3

Query: 622 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALLTAEEAK 446
           L  G++D+ ++  I  + +    VG     +Q +Q+G +++ELKK + +K+++L     K
Sbjct: 220 LAAGLRDWVDFGVICALLLLNATVG----FVQEYQAGSIVDELKKTMALKASVLRDGRVK 275

Query: 445 QGE 437
           + E
Sbjct: 276 EIE 278


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 438 SPCFASSAVKSALFIPTFFSSSMSSPDWCICSIMSQPPTNS 560
           SP   SS + S+    + FSS++SS      S  S  PT+S
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 602  IFYTLSKIFITQHIMALVRNCMHPHNLNNSIT 697
            I YT S  F+T   +  +R C H     N +T
Sbjct: 2526 IKYTTSSFFLTDDFVRFIRVCFHSRISGNLLT 2557


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 298 YFNFNNYVFVSIQYHHLK*IKTIISNTNRKLQN 396
           +F+F + + +   Y+ L   K++I +TN  LQ+
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLIQHTNNLLQS 617


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 310 NNYVFVSIQYHHLK*IKTIISNTNRKLQNQIHNT*DGYFNFSSPLALPLQLLK 468
           ++Y  VSIQ+  L  +   +      +QN +  T   Y N +  L L L  +K
Sbjct: 209 SDYEDVSIQFDRLASLDQALDVPIESIQNALQQTGTEYANLTEKLTLLLDTIK 261


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -3

Query: 520 QSGELIEELKKVGIKSALLTAEEAK 446
           + GE ++E++K+GI+ A   AEE++
Sbjct: 298 RKGEDVQEIEKIGIEIAKARAEESQ 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,443
Number of Sequences: 5004
Number of extensions: 58794
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)