Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C06
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.9  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    25   7.8  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 490 VYSFTIHSIESRL*VLHLTKLFYKLISFSVNLSNSKQLHSSAGRIHLNSL**VVLNTYW 666
           VYSF++ ++            F+K+  +  N     Q+  +A ++H + L   V+NTY+
Sbjct: 383 VYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQLHYHDLILYVINTYY 441


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 228 YFCVLREESDIDREFDKTLYDRIKGLEKE 142
           Y CV++   D+  +FD+ + +++  L K+
Sbjct: 57  YVCVIKTHIDVVEDFDQDMVEKLVALGKK 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,132
Number of Sequences: 5004
Number of extensions: 48202
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)