Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C03
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    61   2e-10
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.11 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.4  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   1.8  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   9.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 32/79 (40%), Positives = 44/79 (55%)
 Frame = -1

Query: 661 EIXEAFVAQTLSCAKALKLDMSKLXVXGGATALGHPLGASGSRITAHLVHEXXXXXXXXG 482
           EI EAF    ++  K L LD  ++ + GG  A+GHPLG+SGSRI   L +         G
Sbjct: 317 EINEAFSVVAVANTKILGLDPERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIG 376

Query: 481 VGSACIGGGQGIALMIETV 425
           V + C GGG   +++IE V
Sbjct: 377 VAAVCNGGGGASSIVIERV 395


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 441 RAIPCPPPMQADPTPRRNPRRLSSCTRCAVIREPEAPSGCPSAVAP 578
           R+ P PPP ++ P+  R P  LSS    AV   P  P   P   AP
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSR--AVSNPPAPPPAIPGRSAP 401



 Score = 30.3 bits (65), Expect = 0.26
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 449 PLPPADAGRPHPAPQPAPSELVHEVRRDPGAGG 547
           PLPPA A  P PAP PAP+  V  +   P   G
Sbjct: 468 PLPPA-APAPPPAPAPAPAAPVASIAELPQQDG 499


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +3

Query: 444 AIPCPPPMQADPTPRRNPRRLSS----CTRCAVIREPEAPSGCPSAVAP 578
           +IP P P  A P P + P   SS        A ++ P +    PSAV P
Sbjct: 148 SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 458 PADAGRPHPAPQPAPSELVHEVRRDP 535
           PA  GRP+ AP+  PSE   + ++ P
Sbjct: 247 PARGGRPNRAPRRGPSETASKTQQAP 272


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 357 LRHFKHPLQVYFC*CRRHVAAAQTVSIMRAIPCP 458
           +RH K P Q+  C C  HV     + + R +  P
Sbjct: 215 VRHMKTPQQINDCDCGLHVCENTRILMYRLLQKP 248


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
 Frame = +2

Query: 395 LVSTPRGGRSNSLDHEGDPLPPADAGRP-------HPAPQPAPSELVHEVRRDP 535
           + ++P G  SN    E DP  P D   P       HP P    S L    + DP
Sbjct: 583 ITNSPEGLHSNQETTEIDPSSPRDDSTPLSWRSHSHPIPPVQVSPLFTSDKNDP 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,940
Number of Sequences: 5004
Number of extensions: 34210
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)