Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C02
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    24   6.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   8.8  

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 271 FNIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRL 128
           F  E+ R  F L+F ++ + +LF+   L ++N       FFF++ L L
Sbjct: 606 FLFEHPRRSFTLLFPSKTTWVLFLN--LTLLNFAS----FFFFMVLDL 647


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 208  KYLNIQPKKLKQIPLFYIQY 267
            +Y+ +  K  KQ+P  +IQY
Sbjct: 1533 EYMQLMLKNFKQVPSVWIQY 1552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,732
Number of Sequences: 5004
Number of extensions: 15406
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)