Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C01
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   4.1  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   7.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   7.1  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   9.4  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   9.4  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    25   9.4  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
 Frame = +3

Query: 483  PFVLPNLYESVLRN----WHFFIVHFLPNYWNCS-------FLHSANNLFHEHSVDTVSG 629
            P  +P  Y S+ R     W FFI  FL NYW  S       F+ SA+N+ H+ ++  +  
Sbjct: 2169 PSKIPAFYRSLFRRRLIMW-FFISVFLQNYWMSSVYGRSWAFMWSAHNV-HKWAMFLL-- 2224

Query: 630  QIVLFHILL 656
             ++LF++ +
Sbjct: 2225 -VILFYVAI 2232


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 743 EVQNLFPDRYYHVGGDEVD 687
           E++++ PD+ +H+ GD VD
Sbjct: 189 EIRSVPPDQLFHIAGDAVD 207


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 483 PFVLPNLYESVLRNWHF 533
           P V  NLY+SV  NW+F
Sbjct: 135 PCVSTNLYDSVRLNWYF 151


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 255 RPRPANDVRIVSHLAPHT-SFTANDVLQTSVLLLLVDHKPRVVTIK 389
           R RP +     S L P+  S  A   L + +LLL +DH P   T++
Sbjct: 320 RLRPDSWKASYSTLVPYNDSSIALSKLTSQILLLFLDHTPHETTVE 365


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 239 AERLWSGLDYKHPPKDPVTIHVRQRIEEHTCRMLR 135
           A   W   D ++P +DP +   RQR EE    + R
Sbjct: 253 AHSSWDARDVEYPEEDPESKADRQRWEEEQAHLDR 287


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 403 SIGTRFMVTTLGLWSTRRRRTLVWRTSLAVKLVCG 299
           S G   +   + + + + R+T  WRTS  + ++ G
Sbjct: 155 STGAALVAACINMGTHKLRKTASWRTSFGINMLWG 189


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 283 IRTSLAGRGRELVL*LNDCGQDSITNTRQKILSLFTYDNVSRNTL 149
           ++++L  +G + +L  N  G   +TN    IL     DN +   L
Sbjct: 36  VKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVL 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,498
Number of Sequences: 5004
Number of extensions: 75801
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)