Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_B22
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical ... 50 9e-07
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 29 1.3
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 29 1.3
AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical ... 29 1.3
AC025716-18|AAT81178.1| 998|Caenorhabditis elegans Hypothetical... 28 2.3
AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine r... 28 3.0
U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-link... 27 4.0
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 27 4.0
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 27 4.0
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 27 4.0
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 27 4.0
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 7.0
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 7.0
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 7.0
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 7.0
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 7.0
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 7.0
Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical pr... 26 9.2
>AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical
protein Y57E12AM.1 protein.
Length = 79
Score = 49.6 bits (113), Expect = 9e-07
Identities = 27/79 (34%), Positives = 40/79 (50%)
Frame = -3
Query: 326 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 147
++I M RYT+P+N A P A F + +VTSTK +R++ KEL ++ +
Sbjct: 1 MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60
Query: 146 AXXXXXXXXXXXLWVGIYV 90
+ LWVGIYV
Sbjct: 61 SVFLGFGSVFLLLWVGIYV 79
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -2
Query: 249 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGSRLIFWFRYFVLVAM 106
+N+++L L R +Y S ++ ++ +TFI+GS +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -2
Query: 249 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGSRLIFWFRYFVLVAM 106
+N+++L L R +Y S ++ ++ +TFI+GS +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical
protein C41D11.5 protein.
Length = 238
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 268 CGKTAGFIGDVYRIIDSISRLIFMAILERNTIKNKTNKTRQTQRLNSF 411
CG T + D R I+R +FM + N+TNKT + RL F
Sbjct: 133 CGDTCAELNDFER--RKINRDLFMHSCSKEQQSNETNKTNKNHRLFVF 178
>AC025716-18|AAT81178.1| 998|Caenorhabditis elegans Hypothetical
protein Y39G10AR.3 protein.
Length = 998
Score = 28.3 bits (60), Expect = 2.3
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = +1
Query: 238 IPIPSNKKVRCGKTAGFIGDVYRIIDSISRLIFMAILERNTIKNKTNKTRQTQRLNSF 411
IP+PSNKK+ GK AG D ++ LI M NK NK TQR+ F
Sbjct: 631 IPMPSNKKIVYGK-AG--KDATMLLSDDGSLIAMG-------SNKHNKLNLTQRVGFF 678
>AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 56 protein.
Length = 321
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 138 FWFRYFVLVAMGRDLCVIS 82
FWFRY+VLV+ G C+ S
Sbjct: 142 FWFRYYVLVSFG--FCIYS 158
>U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform e protein.
Length = 334
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 186 KRYVQRVTFIIGSRLIFWFRYFVLVAM 106
++ ++ +TFI+GS +I W ++VL +
Sbjct: 251 RKALRTITFILGSFIILWTPFYVLATI 277
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 186 KRYVQRVTFIIGSRLIFWFRYFVLVAM 106
++ ++ +TFI+GS +I W ++VL +
Sbjct: 531 RKALRTITFILGSFIILWTPFYVLATI 557
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 186 KRYVQRVTFIIGSRLIFWFRYFVLVAM 106
++ ++ +TFI+GS +I W ++VL +
Sbjct: 584 RKALRTITFILGSFIILWTPFYVLATI 610
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 186 KRYVQRVTFIIGSRLIFWFRYFVLVAM 106
++ ++ +TFI+GS +I W ++VL +
Sbjct: 581 RKALRTITFILGSFIILWTPFYVLATI 607
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 186 KRYVQRVTFIIGSRLIFWFRYFVLVAM 106
++ ++ +TFI+GS +I W ++VL +
Sbjct: 531 RKALRTITFILGSFIILWTPFYVLATI 557
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = -2
Query: 168 VTFIIGSRLIFWFRYFVLVAM---GRDLCVISM*RYNLSYE*C----NNTPFLY 28
+TFI+G I W Y+++ + + C+ S Y LSY C + PF Y
Sbjct: 638 ITFIVGFFAILWSPYYIMATVYGFCKGECIPSF-LYTLSYYMCYLNSSGNPFAY 690
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = -2
Query: 168 VTFIIGSRLIFWFRYFVLVAM---GRDLCVISM*RYNLSYE*C----NNTPFLY 28
+TFI+G I W Y+++ + + C+ S Y LSY C + PF Y
Sbjct: 607 ITFIVGFFAILWSPYYIMATVYGFCKGECIPSF-LYTLSYYMCYLNSSGNPFAY 659
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = -2
Query: 168 VTFIIGSRLIFWFRYFVLVAM---GRDLCVISM*RYNLSYE*C----NNTPFLY 28
+TFI+G I W Y+++ + + C+ S Y LSY C + PF Y
Sbjct: 547 ITFIVGFFAILWSPYYIMATVYGFCKGECIPSF-LYTLSYYMCYLNSSGNPFAY 599
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = -2
Query: 168 VTFIIGSRLIFWFRYFVLVAM---GRDLCVISM*RYNLSYE*C----NNTPFLY 28
+TFI+G I W Y+++ + + C+ S Y LSY C + PF Y
Sbjct: 547 ITFIVGFFAILWSPYYIMATVYGFCKGECIPSF-LYTLSYYMCYLNSSGNPFAY 599
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = -2
Query: 168 VTFIIGSRLIFWFRYFVLVAM---GRDLCVISM*RYNLSYE*C----NNTPFLY 28
+TFI+G I W Y+++ + + C+ S Y LSY C + PF Y
Sbjct: 638 ITFIVGFFAILWSPYYIMATVYGFCKGECIPSF-LYTLSYYMCYLNSSGNPFAY 690
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = -2
Query: 168 VTFIIGSRLIFWFRYFVLVAM---GRDLCVISM*RYNLSYE*C----NNTPFLY 28
+TFI+G I W Y+++ + + C+ S Y LSY C + PF Y
Sbjct: 607 ITFIVGFFAILWSPYYIMATVYGFCKGECIPSF-LYTLSYYMCYLNSSGNPFAY 659
>Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical
protein F11D11.5 protein.
Length = 254
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 231 EEYSYSEQQKG*MWKNCRVYWRRVP 305
E YS+ + G ++KNC W R P
Sbjct: 94 EIYSWKKTDNGWIYKNCNDGWTRYP 118
>Z70718-9|CAA94678.2| 371|Caenorhabditis elegans Hypothetical
protein C04G2.9 protein.
Length = 371
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 306 PVHVANKPGSFSTSNLFVARNRNILHGLVLRLRSYKY 196
PVHV N G S + VA + IL + +R Y Y
Sbjct: 302 PVHVNNHKGDISVGVVNVAGGKQILAKVDVRNEKYGY 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,540,205
Number of Sequences: 27780
Number of extensions: 163829
Number of successful extensions: 394
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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