Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_B21
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0311 - 15635165-15635590,15635777-15638698                       31   0.71 
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353...    30   2.2  

>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 525  YPF*ACFILVXXXXFFTSMFLYYFXISECDIKLNCFLKS*TIKL 656
            YPF + F+LV       S+F  +F + + DI   C+L + TI L
Sbjct: 924  YPFTSIFLLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITL 967


>03_02_0991 -
           13034540-13034830,13035057-13035202,13035203-13035305,
           13037980-13038115,13038221-13038439,13038574-13038949,
           13040854-13041027,13041065-13041101
          Length = 493

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 694 HLRHRSGYNXKLFNLIVHDFKKQFNLMSHSDIXK**RNIEV 572
           H+RHR+ YN K+F L+   + ++     H+ +      IEV
Sbjct: 303 HIRHRNAYNRKVFQLLSGYYLQEAEWFHHNYVPSFKEQIEV 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,210
Number of Sequences: 37544
Number of extensions: 183417
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)