Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_B19
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 221 3e-58
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 215 2e-56
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 32 0.47
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 30 1.9
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 3.3
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 28 5.7
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 7.6
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 221 bits (541), Expect = 3e-58
Identities = 110/171 (64%), Positives = 130/171 (76%), Gaps = 1/171 (0%)
Frame = -2
Query: 575 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 396
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 395 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 219
RR+ GGVGR AQAK + QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQV
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 218 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKK 66
N+A RRRTYRAHGRINPYMSSPCHIE+ LSE+E+ V + P A+K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK-EPESQIAARK 170
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 215 bits (526), Expect = 2e-56
Identities = 110/183 (60%), Positives = 131/183 (71%), Gaps = 13/183 (7%)
Frame = -2
Query: 575 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 432
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 431 KNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTL 255
++VI K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L LL+NAESNAD K L
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120
Query: 254 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 75
DVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+ LSE+E+AV + T AP
Sbjct: 121 DVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180
Query: 74 AKK 66
++
Sbjct: 181 RRQ 183
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 125 SEREDAVARVAPTDDAPA-KKKLSQEKACASKGEDDE 18
+E E+A A+ AP +APA KKKL+ E+ K D E
Sbjct: 20 AEEEEAAAKTAPAAEAPAKKKKLAMERKKQRKEIDKE 56
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 395 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 222
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 221 VNRAPCLR 198
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 434 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 267
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 266 -NKTLDVDRLVIDHIQ 222
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = -2
Query: 233 DHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKKLSQ 54
+H+ +RA R RT A GR + PC APT +P + Q
Sbjct: 69 EHLVASRAVTRRGRTRGARGRRRTWRR-PCSRRGAGGGVATGSLAAAPTAVSPGHAVVDQ 127
Query: 53 EKACASKGEDDEG 15
+A A G+ D G
Sbjct: 128 HEAVAVVGDVDRG 140
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = -2
Query: 578 IMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIP 399
++ + + + K C RGS +R+H KN + P RR + +++ + I
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKIS 589
Query: 398 FRRFN 384
F+
Sbjct: 590 VLHFS 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,291,927
Number of Sequences: 37544
Number of extensions: 392741
Number of successful extensions: 1166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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