Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_B19
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 254 3e-68
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 146 1e-35
AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical... 30 1.7
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 29 2.2
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 6.8
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 254 bits (623), Expect = 3e-68
Identities = 123/174 (70%), Positives = 142/174 (81%), Gaps = 1/174 (0%)
Frame = -2
Query: 566 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 387
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Query: 386 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 207
+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 66 HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125
Query: 206 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDD-APAKKKLSQEK 48
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++ PTDD AP KK S+ K
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRK 177
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 146 bits (354), Expect = 1e-35
Identities = 91/174 (52%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Frame = -2
Query: 566 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 387
YSR P+N KSCKARGS+LRVHFKNT+E A M LR +P RR
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46
Query: 386 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 207
+ + K+ + L LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 47 QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97
Query: 206 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDD-APAKKKLSQEK 48
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++ PTDD AP KK S+ K
Sbjct: 98 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRK 149
>AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical
protein Y39B6A.48 protein.
Length = 186
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +3
Query: 303 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLPDC 473
E FG G ++ C S + + + ++ T +++ VF + +ER +P
Sbjct: 30 ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89
Query: 474 HCGLICVLKVNTEV*TTRFA*FRRVIR-LPRVTTHNYFSQEKISIH 608
CG +CV + +V F F+ + L RV H F+Q + H
Sbjct: 90 MCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRHG-FNQSALRTH 134
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +3
Query: 393 TEWN---TLFLFNHVF--EVTNSTTERHLPDCHCGLICVLKVNTEV*TTRFA*FRRVIR- 554
T W T +++ VF + +ER +P CG +CV + +V F F+ +
Sbjct: 21 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80
Query: 555 LPRVTTHNYFSQEKISIH 608
L RV H F+Q + H
Sbjct: 81 LDRVLRHG-FNQSALRTH 97
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = -2
Query: 329 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 168
W K+ + LL AE++ + D+D++V I + P L R +R +G
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547
Query: 167 NPYMSSPCHIEVCLSER 117
NP+ SPC ++ S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +2
Query: 140 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACPRPKFCC 268
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,586
Number of Sequences: 27780
Number of extensions: 324375
Number of successful extensions: 908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -