Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_B17
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544           28   8.1  
03_04_0102 + 17288910-17289767                                         28   8.1  

>09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544
          Length = 165

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 236 FLSWSCVLNCYCYVIFT*GTNFAIKRYCKTDP 331
           F+ ++ +LN Y Y+ +T  T+ A K+  KT P
Sbjct: 126 FVVFTMILNVYFYMYYTKSTSQAAKKINKTTP 157


>03_04_0102 + 17288910-17289767
          Length = 285

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 578 RCLNVRLYLRVEAIXQIGITHSQYDLSHSTLRYAI 682
           RCL   +    +AI  +G+ H + +L   TLR AI
Sbjct: 240 RCLLTAIKYIDKAIAAVGLVHGEVELMDQTLRQAI 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,315
Number of Sequences: 37544
Number of extensions: 209281
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)