Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_B15
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   126   4e-30
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    61   2e-10
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    61   2e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    41   2e-04
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.0  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   4.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  126 bits (303), Expect = 4e-30
 Identities = 55/64 (85%), Positives = 62/64 (96%)
 Frame = -3

Query: 660 KMAATFIGNSTAXQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 481
           KM+ATFIGNST+ QE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE
Sbjct: 362 KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421

Query: 480 YQQY 469
           YQQY
Sbjct: 422 YQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 23/61 (37%), Positives = 40/61 (65%)
 Frame = -3

Query: 654 AATFIGNSTAXQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 475
           A   + N+T+  E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 378 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 437

Query: 474 Q 472
           +
Sbjct: 438 E 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 23/61 (37%), Positives = 40/61 (65%)
 Frame = -3

Query: 654 AATFIGNSTAXQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 475
           A   + N+T+  E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 374 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 433

Query: 474 Q 472
           +
Sbjct: 434 E 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = -3

Query: 660 KMAATFIGNSTAXQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DL 490
           +++   + N T+   LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL
Sbjct: 372 RVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADL 431

Query: 489 VSEYQ 475
           ++EY+
Sbjct: 432 INEYE 436


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 258 KLPVMTNYLNEHNLFNTFLDIPPGLVE 178
           K+    ++L EHN+FNTFL    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 221 ICSIHSLIFHQASLRARSEICKG*SKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVPF 42
           + S+H +   Q+ + ARS    G   +  F  H   + +K  + +S P +  +T+TP P 
Sbjct: 631 LASLHDMRKSQSPICARSATSAG---LPRFEYHT--SLSKSLEHSSTPASLQATKTPSPS 685

Query: 41  Y 39
           +
Sbjct: 686 F 686


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 636 NSTAXQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 529
           NS+  Q L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 80   VSNFDPPFCFCCTYYVNKK 136
            VSN  PPF  C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,993
Number of Sequences: 5004
Number of extensions: 39860
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)