Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_B12
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma... 57 2e-09
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 28 1.0
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 28 1.3
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.3
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 27 2.3
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 27 3.1
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 5.4
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 7.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 9.4
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.4
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 25 9.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.4
>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = -3
Query: 386 PSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVF 207
P+ YGF +YL S ++ +WA TP L +F I+YY ++W+ A+P +L L ++
Sbjct: 5 PTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIP-TWLFVLVIY 63
Query: 206 AFLIYPSINM-ILTPHIDSPNTFQDKFS 126
++ + N +LT S D+++
Sbjct: 64 IHVVLNAYNTEVLTKPFSSLECIVDQYA 91
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 398 PAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVA 219
PA T S LY FF L S+ + +W + P S +H+ +Y P+K P L A
Sbjct: 690 PALT-SEWLY-FFDQLHSQCYKGNYELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDLEA 747
Query: 218 LTVF 207
L ++
Sbjct: 748 LKLY 751
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 404 HTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNI 276
HT A T + GF L+L S+T L WAF S F +
Sbjct: 81 HTKAVTKGLKI-GFMLFLISETFLFASIFWAFFHSSLSPTFEL 122
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 322 VFGLLHQIVFYIILTFITIHKNTGPQHYQYNFW 224
VFGL++ I+ +++ + I++ PQH W
Sbjct: 657 VFGLIYFIIGFLVYKYELIYQMEHPQHSTGELW 689
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 247 VDQYFCG***MLK*CRKLSGVKAQIQNIVRVVLLNKYRKKPYKDLDGV 390
+DQ FC +K CR+ +++ V +V + R++ Y DL+G+
Sbjct: 47 IDQIFCS---SMKRCRETIAPYLELKPEVPIVYTDLIRERVYGDLEGM 91
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 392 PTPSRSLYGFFLY-LFSKTTLTMFCIWAFTPDSFLHY 285
PT LYG L L SKTT ++ I A+ P +HY
Sbjct: 122 PTLENILYGSNLSSLLSKTTHSILDILAWVPYGVMHY 158
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 557 LYVHHFLLIPCQHLVHR 607
L+ F+L PCQH HR
Sbjct: 844 LFSEPFVLFPCQHAFHR 860
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 445 VFVIRSIFFRIAFTATLRRFKSKLLNSM*RTLD 543
+ V + F+ ++A+LRR +SKL+ S+ L+
Sbjct: 1007 LLVTEILEFQALYSASLRRMRSKLIKSLLHLLE 1039
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 471 KKYTSYHKNCGKLSNKITSNA*THTST 391
KK+T YHK +S+K+ S T T
Sbjct: 1035 KKFTDYHKFLENISDKLKSEEDTSLET 1061
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 90 GKSFIICFTCKIRKLILKSVWTINMWSK 173
GK +CF+C I ++ IN W +
Sbjct: 937 GKMLAVCFSCLIFNELIMVALQINTWEQ 964
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 623 NASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRL 495
N LV DVL+ +K SG RE Y++ KSL + L
Sbjct: 456 NTGLVSDVLSPFGGVKESGFGREGSKYGISEYLDIKSLTISTL 498
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.4
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 290 HYFNI-YYYPQKYWSTAL---PIQFLVALTVFAFLIYPSINMILTPHIDSPNTFQDKFSD 123
H FN + Y Q Y++ +L P V T F L + + TP ID+P+ + KFSD
Sbjct: 256 HIFNQRHQYLQNYYTASLTNIPTISNVNATNFHPL-HSQQPYVDTPGIDAPSDLEAKFSD 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,339
Number of Sequences: 5004
Number of extensions: 58636
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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