Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_B11
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   2.9  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    26   5.1  
Z81089-6|CAB03134.2|  219|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U67950-1|AAP13771.1|  465|Caenorhabditis elegans Hypothetical pr...    26   6.8  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    26   6.8  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 57   CMERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVE 182
            C E   S+  +HR   C+ D+ R +D    + C R Q  + E
Sbjct: 1030 CSETCGSNGKMHRKSYCVDDSNRRVD---ESLCGREQKEATE 1068


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 57   CMERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVE 182
            C E   S+  +HR   C+ D+ R +D    + C R Q  + E
Sbjct: 1030 CSETCGSNGKMHRKSYCVDDSNRRVD---ESLCGREQKEATE 1068


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +3

Query: 120 RRSLDTYIRNCCSRNQSRSVEVLP 191
           R+++ ++  N C +NQSR++ ++P
Sbjct: 306 RKAILSFFCNFCQQNQSRTITIVP 329


>Z81089-6|CAB03134.2|  219|Caenorhabditis elegans Hypothetical
           protein F53H4.2 protein.
          Length = 219

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 69  QHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVEVLP 191
           Q  H       DC++   ++++TY   C   N S S E LP
Sbjct: 110 QIGHLVYEHGFDCLQKEYKNIETYWYTC--SNSSMSTEFLP 148


>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical protein
            T01E8.3 protein.
          Length = 1299

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 175  LLRSCQSYNEDGEQNEQFREHFEQFSKLTDDLGHRRVT 288
            LL   Q  + +G Q  +   HF Q S+L     HR++T
Sbjct: 1180 LLVDVQMCSREGTQLIRSSSHFLQASRLAPVFAHRKIT 1217


>U67950-1|AAP13771.1|  465|Caenorhabditis elegans Hypothetical
           protein T01B6.3a protein.
          Length = 465

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 13  CLRKYQLVAVAVAEVVWRGSIATVRSIGQGTV--SGITDVAWIRISVI 150
           CL    LVA    EV  +  +  ++ IG G +  SG+ +  W   ++I
Sbjct: 208 CLTAILLVAAGNREVASKTLVEFLKEIGSGNIICSGVQNSVWEAANII 255


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 236 CSRNCSFCSPSSL*LWQDLNRSTLVTATTI---TDIRIQATSV--IPDTVPWP 93
           C R C  C  + + + Q    +T+   TT+   T  ++ AT+   +P T P P
Sbjct: 168 CPRTCGVCGSTGVPMAQTTLLTTVKPTTTVVPSTTTKLPATTTKKLPSTTPKP 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,563,990
Number of Sequences: 27780
Number of extensions: 92035
Number of successful extensions: 372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)