Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_B05
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 27 3.8
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 27 5.0
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 27 5.0
Z78416-8|CAB01683.2| 588|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z69717-4|CAA93533.2| 588|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 6.7
U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical pr... 26 8.8
U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical pr... 26 8.8
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 26 8.8
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 312 IVECGHTFVGTSVNRPLVYHHDVQYSSKMFRKR 214
++E G V V + + Y +++ + KMFRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 291 FVGTSVNRPLVYHHDVQYSSK 229
F + +NR VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 189 PHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVN 73
P+ PS+ R+++ I K SA+ IGY+ VN
Sbjct: 1386 PYEPSVRSRNVKAISGRRKVNRVVSASTINCPIGYDLVN 1424
>Z78416-8|CAB01683.2| 588|Caenorhabditis elegans Hypothetical
protein E01G6.3 protein.
Length = 588
Score = 26.6 bits (56), Expect = 6.7
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -2
Query: 201 HFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVNLRMKSERGSKIHYDV 28
H S P V S + QGI TY+ A AN GG Y F + + S S + Y V
Sbjct: 369 HDSAP-VNSTYESFTQGIFVSTATYAEAQAN--AGGTVYLFQSNQQPSSHVSDMQYFV 423
>Z69717-4|CAA93533.2| 588|Caenorhabditis elegans Hypothetical
protein E01G6.3 protein.
Length = 588
Score = 26.6 bits (56), Expect = 6.7
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -2
Query: 201 HFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVNLRMKSERGSKIHYDV 28
H S P V S + QGI TY+ A AN GG Y F + + S S + Y V
Sbjct: 369 HDSAP-VNSTYESFTQGIFVSTATYAEAQAN--AGGTVYLFQSNQQPSSHVSDMQYFV 423
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 129 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 221
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 129 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 221
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical
protein C27F2.4 protein.
Length = 283
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 312 IVECGHTFVGTSVNRPLV 259
I++ GH FVG V+RP++
Sbjct: 71 ILDAGHMFVGVDVSRPML 88
>Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical
protein H03A11.1 protein.
Length = 512
Score = 26.2 bits (55), Expect = 8.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 309 RSPQRRVATQRFATSSWQMALNNC 380
RSP RR +++ + WQ ++N C
Sbjct: 310 RSPYRRTYSKKNQVAEWQSSMNYC 333
>U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical
protein M02F4.7 protein.
Length = 322
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +1
Query: 16 KQNVYIVMNF*SALALHAEIDEVIADSALGDVRRSSAIGLVEGQNALNGPPEYGRYMR 189
+ N+ I + + S D + D A G A +GQ LN P Y YMR
Sbjct: 246 RDNIIIGLTYNSDRGYFQWDDSTVFDYAQGFAPAEPADYTSQGQIILNNPMGYATYMR 303
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 249 DVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANI 106
D+Q ++M +V S P F G +AFDK YS A+A +
Sbjct: 634 DLQKVTQMAYSQVVKFGMSEKVGPLSFETPAPGEMAFDKPYSEATAQL 681
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,814,331
Number of Sequences: 27780
Number of extensions: 203027
Number of successful extensions: 480
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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