Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_A24
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   6.4  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  TQHTNVFAKSQSLQSSNPVKAVTRIKGSQN 104
           T+ T  + ++   Q SN VKA+  ++ SQN
Sbjct: 275 TKRTKSWKRATCQQLSNAVKAILHLRSSQN 304


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 45  QSLQSSNPVKAVTRIKGSQNAIGMLKYYNINKLCIKFIE 161
           QS +S +PV A+      QN + +L+   +   CI FIE
Sbjct: 734 QSKKSESPVWALNPDDFDQNRLTLLRVPTLIVSCINFIE 772


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 372 RDLYWLFVSIICYIIV 419
           R LYW+FV++ C  ++
Sbjct: 135 RILYWIFVAVACIFVI 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,255
Number of Sequences: 5004
Number of extensions: 29718
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)