Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_A24
(604 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.00
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.3
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.3
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 5.3
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 5.3
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 21 7.0
AY526235-1|AAS20468.1| 169|Apis mellifera esterase protein. 21 7.0
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 21 7.0
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 9.3
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.00
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C M +
Sbjct: 95 HDGSCLYVPPGIFKSTCKMDI 115
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C M +
Sbjct: 95 HDGSCLYVPPGIFKSTCKMDV 115
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 69 QDWKIAAIVILRRHLYV 19
+DWK A+VI R LY+
Sbjct: 469 EDWKYVAMVIDRLQLYI 485
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C + +
Sbjct: 95 HNGSCLYVPPGIFKSTCKIDI 115
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C + +
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDI 183
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C + +
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDI 183
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C + +
Sbjct: 95 HDGSCLYVPPGIFKSTCKIDI 115
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C + +
Sbjct: 95 HDGSCLYVPPGIFKSTCKIDI 115
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 594 HRGHCSPLSPGVFPELCHMSL 532
H G C + PG+F C + +
Sbjct: 95 HDGSCLYVPPGIFGSTCKIDI 115
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 5.3
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = +3
Query: 387 LFVSIICYIIVLMG 428
LF++I+C++ L+G
Sbjct: 417 LFIAIVCFVSYLIG 430
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 5.3
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = +3
Query: 387 LFVSIICYIIVLMG 428
LF++I+C++ L+G
Sbjct: 470 LFIAIVCFVSYLIG 483
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 576 PLSPGVFPELCHMSLL 529
P SPG F CH +LL
Sbjct: 68 PNSPGSFTAGCHSNLL 83
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 576 PLSPGVFPELCHMSLL 529
P SPG F CH +LL
Sbjct: 68 PNSPGSFTAGCHSNLL 83
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 600 SIHRGHCSPLSPGVF 556
S+H + SPLS G+F
Sbjct: 214 SVHYHYLSPLSAGLF 228
>AY526235-1|AAS20468.1| 169|Apis mellifera esterase protein.
Length = 169
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 600 SIHRGHCSPLSPGVF 556
S+H + SPLS G+F
Sbjct: 85 SVHYHYLSPLSAGLF 99
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 600 SIHRGHCSPLSPGVF 556
S+H + SPLS G+F
Sbjct: 214 SVHYHYLSPLSAGLF 228
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.0 bits (42), Expect = 9.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +3
Query: 381 YWLFVSIICYIIVLMGCWFSLW 446
Y+LF + I ++++ W S W
Sbjct: 246 YYLFHTYIPTCLIVIMSWVSFW 267
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,203
Number of Sequences: 438
Number of extensions: 2211
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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