Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_A22
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    98   5e-23
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 98.3 bits (234), Expect = 5e-23
 Identities = 45/99 (45%), Positives = 63/99 (63%)
 Frame = -2

Query: 397 APVVKSSYDITPEGHFQFNYETGNGIYAQAEGAVKNVNSEYPAIEVKGAYKYTSPDGQPI 218
           A +     ++  +G++  N+ET NGI  Q  G  K V++E P +  +G+  YT+PDGQ +
Sbjct: 27  AVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQV 85

Query: 217 DLAYVADENGYQPQGSHLPTPHPIPEAIARALAYIEAHP 101
            + YVADENG+Q QGSH+PT  PIP  I RAL +  AHP
Sbjct: 86  SITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHP 124


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -1

Query: 155 SPNSRGDRPR---SCLHRGPPPQPL 90
           SP+S  D  R   SCL  GPP  PL
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPL 444


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -1

Query: 155 SPNSRGDRPR---SCLHRGPPPQPL 90
           SP+S  D  R   SCL  GPP  PL
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPL 444


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -3

Query: 381 PATTSPLKATSSSTTRPATEFTPRLKVPSRTSTQNTPP 268
           PATT     T+++TT   T  T         S    PP
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPP 691



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 235  PDGQP-IDLAYVADENGYQPQGSHLPTPHPIPEAIARA 125
            P+  P +DL+    + G    GS   T  P P +I+RA
Sbjct: 1369 PERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406



 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 366 PLKATSSSTTRPATEFTPRLKVPSRTST 283
           PL   +SST+ PAT  T      + T+T
Sbjct: 93  PLHPPASSTSLPATITTTTTTTTTTTAT 120


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 288 STQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 178
           S  N   +K+   +  LP+ DNP  S  +L     NP
Sbjct: 293 SRMNLTLAKMEKTSKPLPMVDNPE-STGNLVYIYNNP 328


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -2

Query: 304 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 215
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -2

Query: 304 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 215
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 303 VPSRTSTQNTPPSKLRVPTSTLP 235
           +P   S   TP S +  P  TLP
Sbjct: 654 LPRPISCHTTPDSFIEAPNKTLP 676


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -2

Query: 304 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 215
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 2   LCQFRLYXLAVCCCLD 49
           LC++  +  A+C C D
Sbjct: 736 LCRYEAHCFALCHCCD 751


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = -3

Query: 363 LKATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNP 220
           L AT         +FT     P     + TP      PT   PL  NP
Sbjct: 178 LLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPLNPNP 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,325
Number of Sequences: 438
Number of extensions: 3547
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)