Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_A12
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   3.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   5.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.5  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 89  SEPISFKLELKGFFHI 136
           SE +SF +E  G+FHI
Sbjct: 63  SEILSFLIEESGYFHI 78


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 394
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 394
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 394
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 394
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 269 SLNMQNNYYYTTTVKQSIVNSNLL 340
           S N  NNYY     K+   N N +
Sbjct: 310 SCNYSNNYYNNNNYKKLYYNINYI 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,765
Number of Sequences: 438
Number of extensions: 4506
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)