Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_A09
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    28   0.64 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   1.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    27   1.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   2.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   7.9  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 201 KVHTGVSLLSSSLHDWCMTASCAQKYRVH 287
           K + G+++  +   +W + + C++KYR H
Sbjct: 155 KTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 316  DSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHII 170
            ++VTYS    C R   + +  ++Q C   +    P   F KP E   ++
Sbjct: 1038 EAVTYSAIIYCLRVLISENIPLNQGCLLPIKVIIPDNCFLKPSETAAVV 1086


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/48 (22%), Positives = 19/48 (39%)
 Frame = -1

Query: 313  SVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHII 170
            ++TYS    C R     D  +++ C   +    P   F  P E   ++
Sbjct: 1021 AITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVV 1068


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 135 SFFQEGFV*RTQIM*VFSSGFVKVHT 212
           SFFQEG +   ++   FS G V +HT
Sbjct: 164 SFFQEGDLLVAEVQQYFSDGSVSIHT 189


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 308  NILEGSRMHPILLRARCCHTP 246
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 139 FFKKALFKEHRL 174
           F KK+LFKEHR+
Sbjct: 486 FLKKSLFKEHRV 497


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 98  YLKSLKFLPVYLVIFSRRLCLKNTDYVSIF 187
           Y++ L++L  Y+VI  ++  L     +SIF
Sbjct: 243 YIQDLEYLSNYMVILQQKQILSQDTILSIF 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,542
Number of Sequences: 5004
Number of extensions: 42924
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)