Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_A02
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 27 2.9
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 27 3.9
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.9
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 3.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 3.9
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 3.9
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 26 5.1
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 9.0
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 9.0
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 9.0
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 764 DGEQRRHXDAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQK 621
+ EQ+ DA+ + K++TF+AEE RK E+ +L ++ +K
Sbjct: 104 ESEQQDSHDAESIPQFGLLTGKQVTFKAEERRKREEKSSNLDEEELRK 151
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 755 QRRHXDAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 600
+R A K +K + IKEL A + +R+Q L+ +LQQ+ K Q
Sbjct: 18 ERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQ 69
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 260 CKILNMQFFFFVSQTKIYTL*GSNV 186
CK++ QFF + +T YTL +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 740 DAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 600
DA+ N K +R KE+ Q + RK+ + L K+++K K +++
Sbjct: 86 DAEDNEAKKMKREKEILRQQRQKRKS--ELTQLSQKVKEKFKKMRKK 130
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 388 HLGST--WRPKISKRSTTKHKNGL 323
H GST W + RST+KH+N L
Sbjct: 417 HAGSTQEWHSHTTPRSTSKHENNL 440
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 260 CKILNMQFFFFVSQTKIYTL*GSNV 186
CK++ QFF + +T YTL +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 89 TCAREHRRDTPPTPAPHTR 33
TCA+E R+ T P P H R
Sbjct: 174 TCAKELRKKTVPCPVQHCR 192
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 752 RRHXDAQKNLRKSERRIKELTFQAEEDRKNHERM-QDLVDKLQQKIKTY 609
+RH + N E+R+KEL Q ++++ + + Q ++ + Q+ ++ +
Sbjct: 719 QRHETEEWNQEAFEKRLKELKNQKRSEKRDADEVTQVMIKECQELLRLF 767
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 179 KGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTPA 45
KG +L I Y+R I S S C R++ R+ P PA
Sbjct: 21 KGLDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPA 65
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 190 LDP*SVYIFVWLTKKKNCIFS 252
LDP YIFV T NC+F+
Sbjct: 102 LDPSGHYIFVTTTAGDNCLFT 122
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 263 NCKILNMQFFFFVSQTKIYTL*GSNV 186
NCK + QFFF V T Y L NV
Sbjct: 1092 NCKAIVYQFFFRVPYTDTYELNVYNV 1117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,466
Number of Sequences: 5004
Number of extensions: 45315
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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