Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_A02
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 33 0.19
01_01_0017 + 133311-133615,133698-133824,133912-134253 32 0.44
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 32 0.58
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122... 31 1.0
03_02_0925 - 12440917-12441560,12441675-12441810 30 1.8
02_05_0482 + 29382696-29383251,29383376-29383692 29 3.1
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 29 4.1
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340... 28 9.4
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104... 28 9.4
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350... 28 9.4
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -1
Query: 758 EQRRHXDAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKI 618
E++ + +K L ++E R +EL + EE+ K E +QD + L++ I
Sbjct: 1522 ERKEKDELKKVLSETEYRNEELVIKIEEENKKVEHLQDTITMLKENI 1568
>01_01_0017 + 133311-133615,133698-133824,133912-134253
Length = 257
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 113 SASECVGCTCAREHRRDTPPTPAPHTRT 30
S+S C + R+ PP PAPHT T
Sbjct: 6 SSSTASAAACCKSRSRNPPPAPAPHTST 33
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -1
Query: 758 EQRRHXDAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQK 621
E++ A+K ++ERR +EL + E K E++QD V +L++K
Sbjct: 979 ERQATETAKKEYAEAERRNEELIKKFEGAEKKIEQLQDTVQRLEEK 1024
>01_01_0134 -
1224084-1224269,1224578-1224662,1224763-1225050,
1225114-1225334,1225511-1225642,1226218-1226494,
1226722-1226770,1226993-1227088,1227779-1227911,
1228241-1228391,1228484-1228674,1229167-1229382
Length = 674
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 382 GSTWRPKISKRSTTKHKNGLYRFF 311
GS + PK+ ++STTKH+ G +R F
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWRQF 361
>03_02_0925 - 12440917-12441560,12441675-12441810
Length = 259
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 191 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTPAPHTRTCT 24
N++++GY + ++ RG+ S C CA +HRR P A T T T
Sbjct: 53 NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105
>02_05_0482 + 29382696-29383251,29383376-29383692
Length = 290
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 370 ARSNLGGKVPKPSARAGRERWGAG 441
+R LG K P P R G+ER G G
Sbjct: 39 SRKRLGAKPPSPQRRGGQEREGGG 62
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -1
Query: 740 DAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIK 615
DA++ L+ ++R + L + E R+ ++R+ + KLQ+KIK
Sbjct: 141 DAKEELKITKREKEYLNTKLETKREENKRLDEENKKLQRKIK 182
>04_01_0256 +
3402982-3402984,3403077-3403158,3403307-3403449,
3403557-3403832,3404136-3404315
Length = 227
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -1
Query: 737 AQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 600
A++ ++ +R + L + + RK + R+++ KLQ+KIK +++
Sbjct: 121 AEEEQKRLKRDKENLNLKVDTKRKENRRLEEENKKLQRKIKDLEQK 166
>03_05_1143 +
30709825-30709926,30710105-30710260,30710356-30710439,
30710769-30710882,30711019-30711111,30711888-30711977,
30712157-30712227,30712300-30712374,30712481-30712568,
30712748-30712806,30712893-30712956,30713030-30713095,
30713283-30713435,30713522-30713626,30713739-30713974,
30714104-30714173,30714286-30714339,30714501-30714557,
30714662-30714741,30716056-30717919
Length = 1226
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 719 KSERRIKELTFQAEEDRKNHERMQDLVDKLQQKI 618
K ERR+ ELT + E +K HE + + ++Q ++
Sbjct: 603 KLERRVDELTLELEAAKKYHEESEAVELQVQTEV 636
>01_01_0475 +
3500385-3500880,3501078-3501154,3501851-3502019,
3502385-3502473,3502601-3502765,3502841-3502918,
3503087-3503190,3503317-3503422
Length = 427
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 613 VLIFCCSLSTRSCIRSWFLRSSSAWKVSSLMRLSDLRKF 729
+L+ C + C+ WF R + +L++ +DLR F
Sbjct: 377 ILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSF 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,935,195
Number of Sequences: 37544
Number of extensions: 334947
Number of successful extensions: 1268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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