Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P24
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   2.1  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    28   3.6  
04_04_0500 - 25677767-25680850                                         28   4.7  
10_07_0162 - 13713504-13714754,13716445-13716522                       27   6.3  
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614...    27   6.3  
04_03_0314 - 14238620-14240128                                         27   8.3  

>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 216 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNR 338
           W EAL L P  + G   P +LYQ  L  P   +L++ V+ R
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232


>02_01_0055 +
           410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 106 SHDP*VTVTSHRDIQYKLTLDNLYLFIDQQFL 11
           +H   + +T H ++QY L+L N  L I+ QF+
Sbjct: 898 THGEGIILTGHSELQYYLSLMNQQLPIESQFI 929


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 118 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 216
           P ++H +  R+LHGR+    RG S  L R+G++
Sbjct: 67  PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 160 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 270
           RV+DPN GT A+     ++ G   +F    L   NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375


>06_03_1119 +
           27760412-27760527,27760851-27761010,27761283-27761449,
           27761525-27761629,27762097-27762864,27762942-27763131,
           27763763-27763940,27764106-27764497
          Length = 691

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 371 LNPECIDEQQLSVFDKLMELVLSW--RRQSTLI*CFRPLNSRNTTGLKL 231
           +NP CI  +QL + + L+    +W   R S  I  FR L+  N+   KL
Sbjct: 396 VNPSCICFEQLKITNSLVHKESNWHLERLSDEIDLFRELHDDNSKFAKL 444


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 240 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 103
           + ++ L  + P  + P R   + + NPP    APPT   +R    P
Sbjct: 6   SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,277,067
Number of Sequences: 37544
Number of extensions: 238621
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)