Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_P23
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 28 2.0
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 2.6
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 27 2.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 27 4.5
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 6.0
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 6.0
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 6.0
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 7.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 413 LPSSPSHCMKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 300
LPS PS R TP T +++P G M P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 509 LLELWVMKILQVTLRETKPLFTNWIQLKMGN*RR*SKLCHYQTA 640
LL LW + + L +T+PL T + K G R + +C Y A
Sbjct: 103 LLFLWAIVMNMDALFQTQPLLTLVVHCKAGKGRTGTVICSYLVA 146
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 163 IEKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKYVPTTEKHTKTSLDGRVGFIL 330
I + E G P WDE+++AL F Q K +P T + T R F L
Sbjct: 516 ISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMK-MPLTPRRASTGPRPRPTFQL 570
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 544 NFERNKASLYKLDSAKDGKLEKMIETVSLSNGL 642
N E K + K +G L+ +ET++L NGL
Sbjct: 74 NNEYRKTDVVKNSDTDNGLLKSAVETITLENGL 106
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -3
Query: 727 QYPHHNQILLSKTALNLCNKTPFPSS---PKRGRLIMTQFRSSSLVSHL 590
+Y HN+ L + L L KTP S+ PK ++ +T SSS V HL
Sbjct: 76 EYNSHNKHALQNSQLPL-PKTPEKSTVHRPKANKVEVTDLPSSSSVEHL 123
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 543 TWRIFMTHSSSKQPPTRICFA 481
T+R F T SS+K P +CFA
Sbjct: 21 TFRKFTTESSTKSPIADVCFA 41
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 398 SHCMKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 297
SH N + + P N S VP+TGN+K L V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = +1
Query: 505 LFAGTMGHEDP---PGNFERNKASLYKLDSAKDGK----LEKMIETVSLS 633
L +G E+P PGNF + SLY++ + G+ E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 302 LVFVCFSVVGTYLCIVLSWMLTKYS 228
++F C V+ L ++LSW T+YS
Sbjct: 248 ILFACQLVLDLALLLILSWGYTRYS 272
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 230 YTL*ASKIKLYTNMYQLLKNI 292
Y + A+K K +T YQLLKNI
Sbjct: 717 YHVSATKKKEFTRQYQLLKNI 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,660,257
Number of Sequences: 5004
Number of extensions: 81341
Number of successful extensions: 255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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