Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P23
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0018 - 8595479-8595678,8595782-8595935,8596396-8597032,859...    30   2.7  
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074...    29   4.7  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    29   4.7  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    29   4.7  
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130...    29   4.7  
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839...    29   4.7  

>04_02_0018 -
           8595479-8595678,8595782-8595935,8596396-8597032,
           8597126-8597217
          Length = 360

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 192 GGRAPLG*TSASAILCEHPR*NYTQICTNY*KTYKNQFRWEGWFHITSGRYNRPICSGSR 371
           G R  +G  +AS + CEH R +    C     TY   F W+G   IT G Y+  + +  R
Sbjct: 89  GDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIF-WDG--SITYGGYSGMLVAHKR 145


>06_03_0878 +
           25606788-25606926,25607205-25607279,25607362-25607426,
           25607504-25607606,25607712-25607762,25608271-25608424,
           25608781-25608925,25609039-25609144,25609267-25609415
          Length = 328

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 754 FDFKQRGLQGIPDGTTIDTDGXL 822
           F F  R L G PD  T+D DG L
Sbjct: 39  FSFSSRPLGGSPDAVTVDEDGDL 61


>05_07_0328 +
           29286109-29286120,29286982-29287146,29288427-29288589,
           29288625-29288903,29289047-29289122,29289725-29289787,
           29292116-29292164,29292413-29292504,29293017-29293068,
           29293209-29293271,29293382-29293431,29293941-29294016,
           29294444-29294656,29294763-29294869,29294966-29295074,
           29295489-29295689,29295773-29296033,29296154-29296171,
           29296287-29296397,29296755-29297030,29297108-29297382,
           29297814-29298165,29298371-29298655,29298715-29299261,
           29301658-29301781,29301871-29301946,29302062-29302136,
           29302300-29302353,29302833-29302892,29302977-29303093,
           29303228-29303361,29303480-29303682,29303879-29303976,
           29304358-29304461,29304537-29304702,29304803-29304925,
           29305047-29305129,29305217-29305358,29305523-29305549,
           29305784-29305854,29305930-29306518
          Length = 2046

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 343 TTDQFVVGVER-KFLFIQWDGEDGSKVAVLKELGEVDK--DRPNNRINDGKADPRGRL 507
           T D   +  ER KF  +QWDGE      + + +G+V     RP +    G  DP  RL
Sbjct: 272 TQDFLFIATERYKFCVLQWDGEKSE--LLTRAMGDVSDRIGRPTDNGQIGIIDPDCRL 327



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 409 GSKVAVLKELGEVDKDRPNNRIN 477
           G KVA  K+L   DKDRP+++ N
Sbjct: 8   GGKVAEPKDLAATDKDRPSSKKN 30


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 772 GLQGIPDGTTIDTDGXLWGGRVWRLMRAP 858
           G   I D    D    L+GG+VWRL  AP
Sbjct: 438 GTPNIMDLVKCDGAALLYGGKVWRLQNAP 466


>03_02_0790 -
           11212540-11212698,11212777-11212873,11212974-11213030,
           11213291-11213379,11213463-11213549,11213820-11213935,
           11214026-11214281,11214361-11214510,11214948-11215106,
           11215456-11215493,11215972-11216063,11216528-11216682,
           11217185-11217253
          Length = 507

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 449 TKTDLITGLMMAKQILVGGCLLELWVMKILQVTLRETKPLFTNWIQL 589
           TKT L    ++    L  GCL   ++ K+ ++T  +  P +T+WI +
Sbjct: 358 TKTKLYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHP-YTSWIPI 403


>02_04_0498 +
           23480930-23481186,23483615-23483705,23483790-23483935,
           23484029-23484248,23484314-23484422,23484518-23484686,
           23484801-23484975
          Length = 388

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +1

Query: 529 EDPPGNFERNKASLYK-LDSAKDGKLEKMIETVSLSNGLAWDLKEKAFYYTDSMQFSITK 705
           E+  G  E  +A L K L   + G+ EK +E + ++ G    + +K      ++Q  +  
Sbjct: 91  EENLGESEVREAHLAKSLYFMRVGEKEKALEQLKVTEGKTVAVGQKMDLVFYTLQIGLFH 150

Query: 706 FDYDVDTGEISNPRNIFD 759
            D+D+ +  I   +N+F+
Sbjct: 151 MDFDLISKSIDKAKNLFE 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,846,236
Number of Sequences: 37544
Number of extensions: 513035
Number of successful extensions: 1238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)