Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P22
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    78   1e-15
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    66   7e-12
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    34   0.019
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   1.3  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.9  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.9  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   5.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   5.1  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   6.7  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 4/190 (2%)
 Frame = +3

Query: 150 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 317
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+     +L G     +A+V Q+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96

Query: 318 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 497
            S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+LV  R+T
Sbjct: 97  CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156

Query: 498 LADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYDP 677
           LAD+     L     +VL  S  +   ++ R++ T+ HQ ++ A+   L     P     
Sbjct: 157 LADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQPLPIIK 216

Query: 678 KKYQELAGAQ 707
            + +E A A+
Sbjct: 217 AENKEAAPAK 226


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 65.7 bits (153), Expect = 7e-12
 Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 8/203 (3%)
 Frame = +3

Query: 39  GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 218
           G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  ADG
Sbjct: 4   GTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIGADG 60

Query: 219 KVLLTESNAIAYYVAN------ESLRGGDLATQARVWQWASWSDSELL-PASCA-WVFPY 374
             L      + Y+         E L   +   +A + +W  + + +++ P +   WV  +
Sbjct: 61  FELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWVGMF 120

Query: 375 LGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLD 554
            G + + ++  + + +  + +LK+ +  +  RT+LV +R TLAD+   S L   F  ++D
Sbjct: 121 RGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSIID 180

Query: 555 PSVRSSLINVQRWFLTVAHQPQV 623
              R  L ++ R+++T+ HQ ++
Sbjct: 181 EKTRKELPHLTRYYITMFHQAKL 203


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 447 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 623
           LD  L + TF+  +  I++AD+ V++ + H++   L       L NV RWF  + HQ  V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186

Query: 624 SAVVGSLTLCAAPPTYDPKKYQ 689
                S+++  A    +  K Q
Sbjct: 187 MEAANSMSMKLANIDLNAPKIQ 208


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 424 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 516
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 57  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 236
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 237 SN 242
           SN
Sbjct: 612 SN 613


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 286 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 381
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 226 STFPSALSNAGTFPAGNFFKKSSDL 152
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 237 SNAIAYYVANESLRGGDLATQARVWQWAS 323
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 316 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 423
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,210
Number of Sequences: 5004
Number of extensions: 68889
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)