Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P20
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   3.2  

>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 461 YLPIDNRKNFTSLARTHARYVCVHR*AVKLVYAVFPCSIH 342
           Y P  NR  FT   R  A   C +R     V A+ PC++H
Sbjct: 237 YKPKCNRIFFTRNGRRCAELPCTYRNLYPTVGAIGPCTLH 276


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 167 KKRRAICAQVTITNLFIAEPVSCCICFRFYSCSGR 271
           KK R I   V +   F+A  +SC I FRFY  + R
Sbjct: 62  KKHRYIYLAVCL--FFLASVLSCAIIFRFYLHTNR 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,817
Number of Sequences: 5004
Number of extensions: 65536
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)