Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P20
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445...    29   4.4  
04_01_0341 - 4442727-4445597                                           29   5.8  
04_01_0342 - 4457825-4460863                                           28   7.7  
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692     28   7.7  

>04_04_0416 +
           25042937-25043350,25044038-25044238,25044343-25044525,
           25044975-25045084,25045317-25045376,25045620-25045911,
           25046780-25046967,25047275-25048149,25048846-25049805,
           25050025-25050068,25050860-25050925,25051176-25051364
          Length = 1193

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 706 SHSLSRFRRLNESYLNPYETYHQANPSFQSQTIDLNLP 593
           S S +  RR+     NP+   H A PS  S++ D++LP
Sbjct: 751 SRSPANSRRIAREGSNPFLDIHYAGPSGNSESNDVSLP 788


>04_01_0341 - 4442727-4445597
          Length = 956

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 734 LXSTHQAYCPTLTFLHPMNTPVN 802
           L S H  YCP LTF+ P++ P +
Sbjct: 794 LRSIHLHYCPRLTFVLPLSWPTS 816


>04_01_0342 - 4457825-4460863
          Length = 1012

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 734 LXSTHQAYCPTLTFLHPMNTP 796
           L S H  YCP LTF+ P++ P
Sbjct: 857 LRSIHLHYCPRLTFVLPLSWP 877


>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
          Length = 540

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 679 LNESYLNPYETYHQANPSFQSQTIDLNLPIRDLD 578
           ++  Y +P + +H+A PSF  Q   + LP  DL+
Sbjct: 370 VHSPYSSPQQKHHEAMPSFYGQGNTVLLPSTDLN 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,952,228
Number of Sequences: 37544
Number of extensions: 380871
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)