Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P18
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical pr...    31   0.19 
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    31   0.19 
Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of fu...    27   3.2  
U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of fu...    27   3.2  
AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger p...    27   3.2  
AC006790-6|AAF60734.1|  299|Caenorhabditis elegans Hypothetical ...    27   3.2  

>Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical
           protein T23D8.9b protein.
          Length = 239

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 216 SMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKPGEQRR 64
           SMQP   Q  Q TP    TQQ+ +   QQ +   SSP+ +     P + ++
Sbjct: 57  SMQPPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAAPAQNQK 107


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 216 SMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKPGEQRR 64
           SMQP   Q  Q TP    TQQ+ +   QQ +   SSP+ +     P + ++
Sbjct: 57  SMQPPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAAPAQNQK 107


>Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical
           protein Y57G11B.5 protein.
          Length = 225

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 48  MFKYLIFVALLAFASAKPL 104
           MFK L+F ALLA+A A P+
Sbjct: 1   MFKSLVFSALLAYAVAAPM 19


>U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform a protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 216 SMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKP 79
           +  PEN++  Q    +     RP  +MQ  Q   S+P       KP
Sbjct: 254 TFSPENIKRDQHLHTMHTFMDRPNPFMQMYQNQFSNPTYHMFMAKP 299


>U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform b protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 216 SMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKP 79
           +  PEN++  Q    +     RP  +MQ  Q   S+P       KP
Sbjct: 267 TFSPENIKRDQHLHTMHTFMDRPNPFMQMYQNQFSNPTYHMFMAKP 312


>AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger
           protein REF-2 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 216 SMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKP 79
           +  PEN++  Q    +     RP  +MQ  Q   S+P       KP
Sbjct: 255 TFSPENIKRDQHLHTMHTFMDRPNPFMQMYQNQFSNPTYHMFMAKP 300


>AC006790-6|AAF60734.1|  299|Caenorhabditis elegans Hypothetical
           protein Y49F6B.8 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 156 QRPEQYMQQLQGTCSSPAEAWLTRKPGEQRRSSI 55
           ++P Q   +L    SS AE W T    E+ RSS+
Sbjct: 201 KKPAQLTPRLASEISSLAEHWFTNPDSEKLRSSL 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,988,112
Number of Sequences: 27780
Number of extensions: 47696
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)