Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P17
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like ...   138   2e-33
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    28   2.9  
AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    27   5.0  
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical p...    27   8.8  

>U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like
           family protein 5 protein.
          Length = 73

 Score =  138 bits (334), Expect = 2e-33
 Identities = 58/73 (79%), Positives = 67/73 (91%)
 Frame = +1

Query: 112 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 291
           M+E+T NDRLGKKVR+KCNP DT+GDLKKLIAAQTGTR++KIVLKKWYT++KDHI L DY
Sbjct: 1   MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60

Query: 292 EIHDGMNLELYYQ 330
           EIH+G N ELYYQ
Sbjct: 61  EIHEGFNFELYYQ 73


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/63 (26%), Positives = 36/63 (57%)
 Frame = -3

Query: 260 TVYHFLSTILSYLVPVCAAINFFKSPTVSSGLHLTRTFLPSRSLHVTSSILLSNQLSVLL 81
           T Y+F  ++ S+ V    A+NF   PTV   + +   +  + ++HV+ ++L   + S++L
Sbjct: 87  TSYNFYPSLASFSVGYATALNF---PTV---VQICILYTINDAVHVSITLLFEIRSSLIL 140

Query: 80  RNK 72
           +N+
Sbjct: 141 KNR 143


>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -1

Query: 235 FCRI*CQFVRLLTSLNHPRYRQGCI*LEPSYRVDHCMLLQAFCSQISSQFY*EIKYINSN 56
           +CR+  QFV  + S   PRY   C    P+Y+ + C  + A      S F  + K   ++
Sbjct: 195 YCRV-AQFVDYVGST--PRYYCDCPPYAPNYQWNQCSPMSARALSPMSVFSHKPKLSRNS 251

Query: 55  FLFVLVIL 32
           F F L ++
Sbjct: 252 FFFQLNLM 259


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 139 LGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLE 318
           LG     K + +DTV D+K  I  +         L       +DH  + DY I     + 
Sbjct: 161 LGVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTIT 220

Query: 319 LYYQ 330
           +Y++
Sbjct: 221 MYFR 224


>U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical
           protein C16C8.11 protein.
          Length = 214

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 142 GKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYE 294
           G+   +  N  ++V  LK  I  QTG    K  L+       D  KLADY+
Sbjct: 152 GRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADYK 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,784,145
Number of Sequences: 27780
Number of extensions: 120912
Number of successful extensions: 380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)