Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P16
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    92   3e-20
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   4.5  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   4.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   5.9  
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   7.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 92.3 bits (219), Expect = 3e-20
 Identities = 36/74 (48%), Positives = 53/74 (71%)
 Frame = +3

Query: 15  LCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEE 194
           LC+KMGVPY IVK K+RLG ++H+KT   LA+T V   D+   + +V A+  NF+ +Y+E
Sbjct: 169 LCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDE 228

Query: 195 LRKHWGGGVLGNKS 236
            R+ WGGG++G K+
Sbjct: 229 SRRKWGGGIMGGKT 242


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 38  ILHCQGQVPPRCTCTPQDMHMLSSNKC 118
           +LHC  +   RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 76  SAPRRDLPLTMQYGTPILRHNR 11
           S P ++LP T++  T  LRH R
Sbjct: 777 SVPEQELPFTLEQATMDLRHVR 798


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -1

Query: 214 PPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 47
           P Q + SSS  S   V + S++      S DST + +    +   T  P    P+T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 57  KSRL-GALVHRKTCTCLALTNVESGDRASFSK 149
           KSR  G L +R  CTC A+  +     A FSK
Sbjct: 131 KSRQSGTLNNRTLCTCTAIAGIVFTISAVFSK 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,649
Number of Sequences: 5004
Number of extensions: 15685
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)