Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_P16
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 114 3e-26
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 113 4e-26
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 77 7e-15
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 32 0.15
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 32 0.20
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 31 0.26
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 30 0.61
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631 29 1.4
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 28 3.2
01_06_1800 + 39951954-39952068,39952521-39952561 28 3.2
12_01_0328 + 2535049-2535213,2536611-2537777 27 5.6
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 27 5.6
06_03_0694 + 23580116-23580316,23580699-23580701,23581682-235820... 27 7.5
02_01_0793 + 5952319-5952699 27 7.5
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 114 bits (274), Expect = 3e-26
Identities = 47/74 (63%), Positives = 64/74 (86%)
Frame = +3
Query: 15 LCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEE 194
LCRKM VPYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK++EAIK NFN++++E
Sbjct: 165 LCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDE 224
Query: 195 LRKHWGGGVLGNKS 236
+RK WGGGV+G+KS
Sbjct: 225 VRKKWGGGVMGSKS 238
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 113 bits (273), Expect = 4e-26
Identities = 45/74 (60%), Positives = 65/74 (87%)
Frame = +3
Query: 15 LCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEE 194
LCRKM +PYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK++EAIK+NFN++++E
Sbjct: 150 LCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDE 209
Query: 195 LRKHWGGGVLGNKS 236
+RK WGGG++G+KS
Sbjct: 210 VRKKWGGGIMGSKS 223
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 76.6 bits (180), Expect = 7e-15
Identities = 30/54 (55%), Positives = 45/54 (83%)
Frame = +3
Query: 75 LVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 236
+VH+KT + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS
Sbjct: 155 IVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKS 208
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -1
Query: 307 YSAQPCFCANSRALAFSSLA---MRALDLLPRTPPPQCLRSSS*RS-LKFVLMASTTFEK 140
Y A PCFCA + + LA ++AL + + P CLR+ + + L ++ ST ++
Sbjct: 175 YGAIPCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQR 234
Query: 139 EARSPDSTFVR 107
A S + R
Sbjct: 235 VALSTAANICR 245
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.9 bits (69), Expect = 0.20
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 15 LCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERY 188
LC + +PY V K L R TC L LT G+ V E +KT++++
Sbjct: 82 LCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVM 139
Query: 189 EELRKHWGG 215
E+ + G
Sbjct: 140 SEVAEAGNG 148
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 31.5 bits (68), Expect = 0.26
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -1
Query: 271 ALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVH 92
ALAF L + A LL PP + S R ++ + + R P+ + A
Sbjct: 9 ALAFF-LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSD 67
Query: 91 VLRCTSAPRRDLPLTMQYGT 32
+R T D P T++YGT
Sbjct: 68 KMRVTWITGGDAPATVEYGT 87
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 30.3 bits (65), Expect = 0.61
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -1
Query: 283 ANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 122
A + + A SS R L R+PPP LR + R + V A T E +A +P+
Sbjct: 8 AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
Length = 361
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 286 CANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEK 140
CA S A+ FS+ ++ PRT + ++ S F T+FEK
Sbjct: 182 CARSEAMIFSANLCARINFAPRTTRDRIIQGPKTISQMFPFFKGTSFEK 230
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +3
Query: 15 LCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEE 194
LC + +PY V K L K TC L + +V E +K++++ E
Sbjct: 82 LCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEINEEVKEKLKSDYDHVVAE 141
Query: 195 L 197
+
Sbjct: 142 V 142
>01_06_1800 + 39951954-39952068,39952521-39952561
Length = 51
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 79 TSAPRRDLPLTMQYGTPILRH-NRLGR 2
TS P R LPL ++ P RH RLGR
Sbjct: 3 TSPPTRSLPLRLRLRPPTARHRRRLGR 29
>12_01_0328 + 2535049-2535213,2536611-2537777
Length = 443
Score = 27.1 bits (57), Expect = 5.6
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = -1
Query: 283 ANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRA 104
A+ AL L A+ LLP + S+ R + S + + R+P + A
Sbjct: 2 ASVAALRLVVLLAAAVPLLPPPAASLAVTSTYVRPTARATL-SVLHDGDGRTPQQVHISA 60
Query: 103 KHVHVLRCTSAPRRDLPLTMQYGT 32
+R T D P T++YGT
Sbjct: 61 VGSDKMRVTWITDDDAPATVEYGT 84
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 136 ARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPIL 23
+R P + + H H C + RRD+PL + +P++
Sbjct: 945 SRRPSRSEFKGGHDHRSPCVPSNRRDIPLVRRPPSPVV 982
>06_03_0694 +
23580116-23580316,23580699-23580701,23581682-23582065,
23582299-23582523
Length = 270
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 274 RALAFSSLAMRALDLLPRTPPPQCLRSSS 188
+A+A+S A ALDLL +TPPP ++S
Sbjct: 73 KAIAWS--AAEALDLLEQTPPPSAGSAAS 99
>02_01_0793 + 5952319-5952699
Length = 126
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 1 PCPDGYAVKWAYHTALSRASPASV 72
PCP A KW A SR P S+
Sbjct: 99 PCPSEVAAKWISPLARSRQRPRSI 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,452,918
Number of Sequences: 37544
Number of extensions: 133463
Number of successful extensions: 506
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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