Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_P15
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 31 1.2
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 31 1.6
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 30 2.1
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 30 2.1
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 30 2.8
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 29 3.6
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 29 3.6
01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268... 29 3.6
10_08_0662 + 19662748-19662826,19662868-19663136,19664360-196645... 29 4.8
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 29 6.4
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 28 8.4
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 28 8.4
06_03_0725 - 23894215-23894412,23894660-23894803,23895058-238951... 28 8.4
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548... 28 8.4
01_05_0460 - 22442758-22442932,22443134-22443227,22443355-224435... 28 8.4
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 502 SSSGIEGGRNLSVEYHSKVD-NCPIKIGIWHILPRTSYERLKGNFQVDSDKEE 657
SSS +GG+ +SV + KVD CP +HI + ++ L Q D+ K +
Sbjct: 208 SSSRKKGGKEISVVQNWKVDPRCPNASNPFHICAQYCFDHLNETGQKDTSKPD 260
>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 463 FVQWPLNVNFEEPSSSGIEGGRNLSVEYHSKVDNCPIKIGIWH 591
+ Q+ L ++ P SSG++GG + +YH++ N + + H
Sbjct: 1136 YYQFGLVIHSVGPFSSGLQGGSRMKFDYHAQFQNTDVDSQLDH 1178
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 706 MLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDST 831
+LY HGN+ +++ L+ F + + + +DY GYG S+
Sbjct: 60 LLYSHGNAADLGHLYQLFLHLSFN-LRVNVLGYDYSGYGQSS 100
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 676 HELATSKTPIMLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNLCPTE 849
HE A++ +LY HGN+ + + + +++ + +DY GYG ST PTE
Sbjct: 88 HERASAT---LLYSHGNAADLGQMYGL-FVELSRRLRINLFGYDYSGYGRSTGK-PTE 140
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 535 SVEYHSKVDNCPIKIGIWHILPRTSYERLKGNFQVDSD 648
S+ YHS+ +C + + + P S E K NFQV+ D
Sbjct: 335 SIHYHSQSTSCSLDLNNFSSHPDGSPEISKSNFQVELD 372
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 688 TSKTPIMLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNL 837
+S PI+ C + +S + +Y+F + D H + + R GD++NL
Sbjct: 983 SSPIPILTAC-SSIDSSGNDFKALVYQFMPRGDLHKLLYSTRDDGDASNL 1031
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 706 MLYCHGNSNSRAASHRIQLYKFFQKMDFHT----IAFDYRGYGDSTNLCPTEE 852
+LY HGN A+ Q+Y+ F ++ H + +DY GYG S+ P+E+
Sbjct: 80 LLYSHGN-----AADLGQMYELFVELSSHLNVNLMGYDYSGYGQSSGK-PSEQ 126
>01_06_1821 +
40126389-40126508,40126589-40126646,40126782-40126837,
40127076-40127176,40127336-40127405,40127501-40127570,
40127970-40128026,40128110-40128177,40128258-40128338,
40128474-40128551,40128644-40128799,40128874-40128933,
40129253-40129317,40130002-40130059
Length = 365
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 679 ELATSKTPIMLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDS 828
E +S P +L+ HG S+A S+R L ++H IAFD+ G+G S
Sbjct: 117 EAGSSSNPPVLFIHGFP-SQAYSYRNVLPVVSD--NYHAIAFDWLGFGFS 163
>10_08_0662 +
19662748-19662826,19662868-19663136,19664360-19664571,
19665356-19665623,19665709-19666002
Length = 373
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 706 MLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDS 828
++Y HG S R S R +++ + +AFD GYG+S
Sbjct: 98 VVYSHGFSGGRMDSPRAS-QALLKELGVYMVAFDRAGYGES 137
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 700 PIMLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDSTNL 837
P ++YCHGNS RA + + + T+ F G + ++
Sbjct: 66 PCVIYCHGNSGCRADASEAAIILLPSNITVFTLDFSGSGLSEGEHV 111
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 583 IWHILPRTSYERLKGNFQVDSDKEELNRIMDHELATSKTP 702
IWH ER K + DKE+L R++DH+ TP
Sbjct: 376 IWHQSLLAFVERYKNELE-KKDKEKLARLLDHQKHYLVTP 414
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 706 MLYCHGNSNSRAASHRIQLYKFFQKMDFHT----IAFDYRGYGDSTNLCPTEE 852
+LY HGN A+ QLY F ++ + + +DY GYG ST P+EE
Sbjct: 76 VLYSHGN-----AADLGQLYDLFVQLKVNLKVNLMGYDYSGYGASTGK-PSEE 122
>06_03_0725 -
23894215-23894412,23894660-23894803,23895058-23895126,
23895197-23895267,23895357-23895444,23895522-23895707,
23895805-23895903,23896002-23896082,23896575-23896634,
23896656-23896779,23897026-23897120,23897205-23897331,
23897559-23897662,23897883-23897945
Length = 502
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 700 PIMLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYG 822
P ++YCHGNS RA ++ + + T+ D+ G G
Sbjct: 47 PCVIYCHGNSGCRADANEAAVILLPSNITLFTL--DFAGSG 85
>02_01_0735 +
5484398-5484400,5484670-5484773,5485012-5485138,
5485212-5485306,5485597-5485720,5486523-5486603,
5487177-5487275,5487416-5487583,5487688-5487775,
5487860-5487930,5488000-5488068,5488368-5488499,
5488740-5488946
Length = 455
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 700 PIMLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGY--GDSTNL 837
P ++YCHGNS RA ++ + + T+ F G GD +L
Sbjct: 27 PCVIYCHGNSGCRADANEAAVILLPANITVFTLDFSGSGLSGGDYVSL 74
>01_05_0460 -
22442758-22442932,22443134-22443227,22443355-22443519,
22444013-22444134,22445024-22445106,22445251-22445372,
22445668-22445695
Length = 262
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 652 EELNRIMDHELATSKTPIMLYCHGNSNSRAASHRIQLYKFFQKMDFHTIAFDYRGYGDS 828
E+L ++ H T + I++ CHG +++ S + L K FD+ G G+S
Sbjct: 25 EKLVGVLHH---TGSSKIVVLCHGFISTKNDSLILDLMAALTKKGISVFRFDFSGNGES 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,645,202
Number of Sequences: 37544
Number of extensions: 467342
Number of successful extensions: 1017
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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