Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_P13
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 29 0.46
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 0.81
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 1.9
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 5.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.7
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 25 5.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 10.0
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 10.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 10.0
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 29.1 bits (62), Expect = 0.46
Identities = 13/47 (27%), Positives = 17/47 (36%)
Frame = +2
Query: 209 YGADGLEGRIGLPGVPGDWGERGDFGDKGERGTEGSYGRRGDEGPQG 349
YG+ G G G +G +G G G+YG G G
Sbjct: 58 YGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAG 104
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 28.3 bits (60), Expect = 0.81
Identities = 19/86 (22%), Positives = 40/86 (46%)
Frame = +3
Query: 288 TKENEEPKDLMADEETKDHRVCLG*KEYLDSQDWTAVVVLMEFKAFPVYKVHLVIEVFQD 467
T+ +EEP+D A + DHR+ G S+D+ ++ + F +H E + +
Sbjct: 181 TEVSEEPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFS-----HLHCTWEPYNN 235
Query: 468 LTEKKAFKAWQEKVELTQEVQKEIKE 545
++ + K ++ + +EI+E
Sbjct: 236 ISMIRGSKKVDNHIKQVILLDREIRE 261
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 222 DLKEELVYPVCRETGENAAISGTKENEEPKDLMADEET 335
D++++ +Y +CR T ENA + T + +D++ E T
Sbjct: 63 DIEKKTIY-LCRPTYENAKLVATHVRQFQRDMLRIEST 99
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 209 YGADGLEGRIGLP-GVPGDWGERGDFG 286
YG +GL G+ G P G PG+ G FG
Sbjct: 71 YGEEGLNGQPGGPGGGPGEGFPGGGFG 97
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 241 TNSSFKSICSVVPLKAWDARRAYASLISFYSTTITQS 131
++S F S SV+P + ++ S S Y+TT+T S
Sbjct: 290 SSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTAS 326
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 229 FKSICSVVPLKAWDARRAYASLISFYSTTITQSLIT 122
F S SV+P A + ++ S S Y+TT+T S T
Sbjct: 456 FYSNSSVIPTSAPSSVSSFTSSNSSYTTTLTASNTT 491
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 452 YHQVDLVYRERLELHQYHYSRPILGIQILLLTQADPVVLRLLVGHKILRFLVLLC 288
+ ++D+ + +RL L HY LG+ ILL ++ +LR K + L+ C
Sbjct: 103 WERMDMKFLDRLLLST-HYEYVDLGVSILLAFCSEEAILRSYEVKKRVSTLLQCC 156
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 461 PGPYGEKGLQGLAGEGGVNSRGAKGDQGDGGXP 559
PGP G G G GEG + G G G GG P
Sbjct: 202 PGPGGFGGFGGFGGEG--HHHGGHG--GFGGGP 230
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 10.0
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 186 ASQAFKGTTE-QMDLKEELVYPVCRETGENAAISGTKENEEPKDL--MADEETKDHR 347
A Q +G E D +E P R GE +A +E EE ++ AD+ET++++
Sbjct: 280 AGQIEQGMLELSQDTRESTAEP--RAAGEESASEEEEEEEEEEEEENEADDETRENK 334
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -1
Query: 433 YTGNALNSINTTT---AVQSWESKYS 365
Y GN+ NSI+ T+ + QSW + +S
Sbjct: 18 YNGNSFNSIHATSFGMSPQSWGNSFS 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,981
Number of Sequences: 5004
Number of extensions: 40562
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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