Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P10
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.1  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    26   5.4  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   7.2  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   7.2  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   9.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   9.5  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   9.5  

>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 262 NIVGTIIADFITEARSPNIFAFFSSEWLILIISNNCIKFCYIMEEKYLR 116
           N++G  I   +T   + N+F+FF S +L  I ++N I    ++    +R
Sbjct: 165 NVLGIPIPKDVTVLDTQNVFSFFQSLFLKEISNSNNISLAKMLTHLNIR 213


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 369 DLVEDTSVKKKPDIRIVLNQFVEGVGTAGDVLTLHLNKAYENFILPGLAVYANPENLEKY 548
           D+V D S+ +  D   ++     G+    DVL       ++N + PG  V  +P+ +  +
Sbjct: 17  DIVNDVSMTEMEDE--IMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDPQFMRGH 74

Query: 549 KTY 557
            TY
Sbjct: 75  GTY 77


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 303 WPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGV 443
           W P L      V K  G  FVYD++   S  K   +  + N   E V
Sbjct: 279 WKPVLETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQV 325


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 399 KPDIRIVLNQFVEGVGTAGDVLTLHLNKAYENFILPG 509
           +P+  I+LN  ++   + G V    L+ +  NFI PG
Sbjct: 470 EPETGIILNDHMDDFASPGIVNAFGLSPSPYNFIAPG 506


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 363 VYDLVEDTSVKKKPDIRIVLNQFVEGV 443
           V DL+   ++K++P + I +N  V+G+
Sbjct: 87  VRDLIYQNALKQQPTLGIFMNPLVQGI 113


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 706 LRNEALRCQGCRVHGSELLIVTRSTNLCKQSIVLFTNGEL 587
           L +EAL+  GC++H S   I +R  N C  S +     ++
Sbjct: 4   LLHEALQ-NGCKLHKSVEFIQSRDDNACFGSYIAVAQNDI 42


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = +3

Query: 183 HSLEKKAKMFGLRAS-VMKSAIIVPTMFSQQTRNTFILRRRWPPPLHKKGGKVP----KM 347
           ++L  +A++ GL        +++  ++  +  +  ++ + R+    H+  G       K 
Sbjct: 255 YNLPTEARLKGLSVGRTTNYSVVKESLLEEMFKECYLQKLRYGQEFHQIMGDTDIQSIKN 314

Query: 348 KGRHFVYDLVEDTSVKKKPDIR 413
           +G H V  L       KKP+ R
Sbjct: 315 EGDHLVVQLTSQMDKSKKPETR 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,010
Number of Sequences: 5004
Number of extensions: 66722
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)