Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_P10
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical... 79 5e-15
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 29 5.1
AL032646-12|CAA21685.2| 411|Caenorhabditis elegans Hypothetical... 28 6.8
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 28 6.8
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 28 6.8
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical
protein B0205.11 protein.
Length = 276
Score = 78.6 bits (185), Expect = 5e-15
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Frame = +3
Query: 267 QQTRNTFILRRRWPPPLHKKGG--KVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEG 440
Q +RNT++LRR + P + GG K P + Y++VE + K I ++L Q VEG
Sbjct: 17 QASRNTWVLRRVFQPEVTPPGGVQKNPNDFHDYQKYEVVEFETQKSAGPINVILLQDVEG 76
Query: 441 VGTAGDVLTLHLNKAYENFILPGLAVYANPENLEKYKTYEKRPLEE--NTHSSPF-VKRT 611
+G DV+++ A ++ +L AVYA+P +L+ Y + R EE + P+ +K
Sbjct: 77 IGHQFDVVSVDRTLARKDLLLSKKAVYASPFDLKYYSDMKTRMAEELASRIRIPYELKVV 136
Query: 612 MDCLHRLVLRVTMSNSEPWTLQPWHLKASLRKSGFVVPESAIEMPPVQIKGPXPNLLDK- 788
L ++V+ + ++ WT+ +K+SLR+ G V E+ I + I GP ++ K
Sbjct: 137 GRDLQKMVIPIKVNMENQWTIDRNLVKSSLRQMGVFVAENTIFLAAKPISGPNFDIEAKL 196
Query: 789 -EFYV 800
FYV
Sbjct: 197 FRFYV 201
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 301 LRRKIKVFLVCCENIVGTIIADFITEARSPNIFAF 197
++ KIK F++ C++++GT I R +IFAF
Sbjct: 390 IKMKIKEFVISCKSVLGTKIFTGCLLGRVCDIFAF 424
>AL032646-12|CAA21685.2| 411|Caenorhabditis elegans Hypothetical
protein Y54E2A.12 protein.
Length = 411
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 5 RPMKILIVLSSR*PKIL*KIXNSR*RTEAGKCYSLSFPQILFFHYVTEFDTVIRYY 172
R + +L V+ SR L ++ S E G + LS+P F H + ++ ++R++
Sbjct: 239 RELDLLYVILSRVDPSLEQVMRS---VELGTMFGLSWPLTWFSHTLKQYQQIVRFF 291
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 234 KSAIIVPTMFSQQTRN-TFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPD- 407
K A+++P +F+ Q RN I R R LHK + K+ + F D++ D S +K +
Sbjct: 392 KPAVVIP-VFADQIRNANMIARHRGVIYLHKNSMENVKVTRKAFT-DVLFDDSYQKNAEK 449
Query: 408 -IRIVLNQ 428
I++NQ
Sbjct: 450 LANILMNQ 457
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 234 KSAIIVPTMFSQQTRN-TFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPD- 407
K A+++P +F+ Q RN I R R LHK + K+ + F D++ D S +K +
Sbjct: 392 KPAVVIP-VFADQIRNANMIARHRGVIYLHKNSMENVKVTRKAFT-DVLFDDSYQKNAEK 449
Query: 408 -IRIVLNQ 428
I++NQ
Sbjct: 450 LANILMNQ 457
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 675 QPWHLKASLRKSGFVVPESAIEMPPVQIKGPXP 773
QP+ + S ++G VP++ I +PP QI P P
Sbjct: 223 QPYPVFPSYSRAG--VPQTPIPLPPTQINTPYP 253
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 675 QPWHLKASLRKSGFVVPESAIEMPPVQIKGPXP 773
QP+ + S ++G VP++ I +PP QI P P
Sbjct: 223 QPYPVFPSYSRAG--VPQTPIPLPPTQINTPYP 253
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 675 QPWHLKASLRKSGFVVPESAIEMPPVQIKGPXP 773
QP+ + S ++G VP++ I +PP QI P P
Sbjct: 217 QPYPVFPSYSRAG--VPQTPIPLPPTQINTPYP 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,059,383
Number of Sequences: 27780
Number of extensions: 379440
Number of successful extensions: 1008
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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