Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_P09
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 108 3e-24
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 108 3e-24
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 57 1e-08
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 49 3e-06
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 43 1e-04
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 40 0.001
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 40 0.002
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 39 0.002
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 34 0.063
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 31 0.45
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 29 2.4
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 29 2.4
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 3.2
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 29 3.2
Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical p... 27 7.3
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 27 9.6
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 27 9.6
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 27 9.6
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 108 bits (259), Expect = 3e-24
Identities = 46/76 (60%), Positives = 62/76 (81%)
Frame = +2
Query: 122 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 301
MSK HPP LKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 302 VIRGNSIIMLESLDRL 349
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 108 bits (259), Expect = 3e-24
Identities = 46/76 (60%), Positives = 62/76 (81%)
Frame = +2
Query: 122 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 301
MSK HPP LKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 302 VIRGNSIIMLESLDRL 349
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Frame = +2
Query: 146 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV--------GMV 301
L +F+DK++ +K GR +GVLRGFD +N+VLD+ E +D Q +V G++
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query: 302 VIRGNSIIMLESLDRL 349
V RG +I ++ D L
Sbjct: 76 VARGTAITVVSPADGL 91
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +2
Query: 122 MSKAHPPX--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNV 292
MSK P LKK + K + +KLN+G G+L D +MN+ L E EE +GQ +N
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIAL-EQTEEYSNGQLQNKY 59
Query: 293 GMVVIRGNSIIMLES 337
G IRGN+++ + +
Sbjct: 60 GDAFIRGNNVLYIST 74
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 146 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SVEECKDGQRNNVGMVVIRG 313
L +M++ +++ GR + G+L+GFD +NLV+++ S E + +G+ +IRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 314 NSIIMLESLD 343
++ ++ +D
Sbjct: 65 ENVAIIGEID 74
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +2
Query: 158 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRNNVGMVVIRGN 316
+DKKL + L GR + G LR D F NL+L++ VE C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 317 SIIMLESLD 343
++ + +D
Sbjct: 74 NVELAGEID 82
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +2
Query: 206 GVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLES 337
G + GFD FMN+V DE+ E K RN +G ++++G++I ++ +
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHA 85
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +2
Query: 146 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--EECKDGQR-NNVGMVVIRGN 316
+ K + K+ + + + + G L GFD ++N+VL++ V E DG+R + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 317 SIIML 331
I ML
Sbjct: 78 HITML 82
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +2
Query: 140 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 319
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 320 IIMLESLD 343
++ + +D
Sbjct: 71 VLYVGGVD 78
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 34.3 bits (75), Expect = 0.063
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +2
Query: 107 KKHITMSKA--HPPXLKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 265
KK +T+S P L + +D+++ +K+ R + G LR FD +N+VL E VEE
Sbjct: 5 KKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE-VEE 59
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Frame = +2
Query: 158 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK---------DGQRNNV-GMVVI 307
++ ++ I L GR G + FD MN++L E E + DG+ + G+V++
Sbjct: 13 LNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLV 72
Query: 308 RGNSIIML 331
RG I+ +
Sbjct: 73 RGEHIVSM 80
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 170 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 322
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 170 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 322
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 219 PRNTPVTARPAFSFIDNFLSMNFFNXGGCAFDIVMCFLKYYNTELML 79
P PVT RPA N SM ++ C F + +C + EL+L
Sbjct: 1709 PAGIPVTGRPALKLEMNCTSMKHYDSFDC-FRLKVCDMSVQLDELLL 1754
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 146 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSI 322
LK + + ++L G G L+ D +MN+ L + + KDG + + +RG++I
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67
>Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical
protein F17A2.13 protein.
Length = 322
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 319 YYNAGIFRQTLVDLEWARNITNAVNVLHFSSINKYK 426
Y NAGI+RQ + D+ + N + H ++N +
Sbjct: 9 YSNAGIYRQAMEDIMFTPNKDKKKSAFHDETLNSLR 44
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 354 RLRVGKKYHQCCKCASLFINK*I*NSDLK 440
R +G K QC KCA +NK + NS +K
Sbjct: 565 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 593
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 354 RLRVGKKYHQCCKCASLFINK*I*NSDLK 440
R +G K QC KCA +NK + NS +K
Sbjct: 587 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 615
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 354 RLRVGKKYHQCCKCASLFINK*I*NSDLK 440
R +G K QC KCA +NK + NS +K
Sbjct: 587 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,358
Number of Sequences: 27780
Number of extensions: 208537
Number of successful extensions: 444
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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