Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P07
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    28   1.4  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.6  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    25   7.5  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   9.9  

>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 143 LEVLQYQIMQFDHYPPIQRRYL 208
           ++VL +Q+M +D YPP  + YL
Sbjct: 522 IKVLTHQLMLYDLYPPAHQTYL 543


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 143 LEVLQYQIMQFDHYPPIQRRYLML 214
           LE+L   +    HYPP ++ Y  L
Sbjct: 215 LEILNLDVQDLKHYPPTKKLYHQL 238


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 446 KFVHTSGLFICRDSLDLRATHIWNISK 526
           K +HTS L      +DL +   WN+ K
Sbjct: 139 KMIHTSELMSVTSWIDLMSGETWNVMK 165


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +1

Query: 136 LLXRGVTIPNYAIRSLSANTTALPHAXXXXXXXXXLDKLYKRVELEMRGIDPA 294
           ++ R V IP+Y   S+  +    P           +  + K  + EM+ IDP+
Sbjct: 378 MITRRVWIPSYGYLSVDTSDANNPTIGTVSGLEAAMQDVLKEKKQEMKNIDPS 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,745
Number of Sequences: 5004
Number of extensions: 47842
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)