Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P06
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    34   0.027
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    29   0.78 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   1.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    29   1.0  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    27   2.4  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   4.2  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    26   5.5  

>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 547 DDGWGCAYRSMQTIFSWFRY 606
           D GWGC +R++Q + SW +Y
Sbjct: 37  DRGWGCGWRNIQMLISWLQY 56


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 566 LIAQCKQFSLGLDIKVTLMLKYPPIKKFNSALSRLEINSQHSLVQNNGLDLQK 724
           LI +C     G D+++   L  P    FNS  SRLE++S  +++    L + K
Sbjct: 750 LIKKCASNPFGKDLEIDSNLFAPSNSWFNSWHSRLELDSILAIISQFSLPVYK 802


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +2

Query: 500 SEDDTHTIITCKTTSMTMVGVVLIAQC-KQFSLGLDIKVTLMLKYPPIKKFNSALSRLEI 676
           +E+D +++     T+M +   VL     K+ +  LDI  +  L+  P+K +  A   + +
Sbjct: 376 NEEDNYSVARLVFTTMDIGADVLRKFSEKKITANLDISRS-NLEVIPVKIYPYAHELISL 434

Query: 677 NSQHSLVQNNGLDLQKSCFVWKLYWVSN 760
           N  H+L  +  LD  + C   K   +SN
Sbjct: 435 NVSHNLSLDLPLDFMERCVKLKRLDISN 462


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 506 PLTNATVTSDFEACIGMASCGFTKYPPLLSMNALP 402
           P TNA  T+DFE+ I  +     K P +LS + +P
Sbjct: 146 PATNANFTADFESSIEESYSTENKSPVILSSSKVP 180


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 529 MQDNFNDDGWGCAYRSMQTIFS 594
           +++  +D GWGC  RS QT+ +
Sbjct: 63  LENMTSDTGWGCMIRSTQTLLA 84


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 250 LPETFHYLPPEIGHFITRLIPKGKSEDCMQ 339
           + E  HY+P  IG F+  L+ +GKS+  ++
Sbjct: 227 IDEILHYIPDYIGEFL--LVQQGKSDRLLE 254


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 13  LSDKLVKTAVKMMTTXRKPAFYISMPLRIDTLAMIHRNTKLLDLYI 150
           +SDKLV TAV  +       FY   P  +D   +   +++ L+ ++
Sbjct: 819 VSDKLVNTAVLFINIELLSEFYYQFPRELDQRLIHSLSSEQLNAFV 864


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,062
Number of Sequences: 5004
Number of extensions: 68045
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)