Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_P06
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488...   137   8e-33
02_01_0052 + 392339-392395,392604-393400,393520-393634,393831-39...    35   0.067

>12_01_1054 +
           10847342-10847543,10847627-10847962,10848557-10848807,
           10849226-10849313,10849548-10849723,10850597-10850656,
           10850811-10850901,10851563-10851639,10852565-10852653,
           10852950-10853061,10853623-10853725,10854892-10855121
          Length = 604

 Score =  137 bits (332), Expect = 8e-33
 Identities = 55/102 (53%), Positives = 78/102 (76%)
 Frame = +1

Query: 490 VALVRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHKEIQQCLVKI 669
           ++L+ G Y Y+HY+ D  +D+GWGCAYRS+QTI SW+R Q Y+ + VP+H+EIQQ LV+I
Sbjct: 407 ISLIDGSYEYYHYLHDGIDDNGWGCAYRSLQTIMSWYRLQQYSSINVPSHREIQQVLVEI 466

Query: 670 GDKQSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTEL 795
           GDK  +FIGS++WIG+ E+ F L+ LLGV  ++I   +G EL
Sbjct: 467 GDKDPSFIGSREWIGAIELSFVLDKLLGVSCKVINVRSGDEL 508


>02_01_0052 +
           392339-392395,392604-393400,393520-393634,393831-393926,
           394008-394079,395286-395381
          Length = 410

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
 Frame = +1

Query: 523 HYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVE--------VPTHKEIQQCLVKIGDK 678
           HY   +  D GWGC +R++Q + S    Q     E        VP    +Q+ L    DK
Sbjct: 101 HYQSLSSEDKGWGCGWRNIQMLSSHLLKQRPEAREALFGGSGFVPDIPSLQRWLEIAWDK 160

Query: 679 QSTFIGS----------KQWIGSTEVMFCLETLLGVQSRII 771
           +   +GS          K+WIG+TE    L +  G+++R++
Sbjct: 161 KFDTLGSSHFHNKVYGAKKWIGTTECAALLRS-FGLRARVV 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,531,952
Number of Sequences: 37544
Number of extensions: 423126
Number of successful extensions: 923
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)