Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O24
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...   100   2e-22
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    29   0.85 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    26   4.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   6.0  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    25   7.9  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score =  100 bits (239), Expect = 2e-22
 Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 5/106 (4%)
 Frame = +3

Query: 207 KDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQ 386
           +D T AELK+Y+G++ +  V LA+ G +++VT G +FYGP GPYSAFAG DA+RGLA   
Sbjct: 41  RDYTPAELKEYNGSK-NSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNS 99

Query: 387 -----VAASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLL 509
                +  S+ +E DD SDL  +E  +  +W+  F +KY  VGRL+
Sbjct: 100 FDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLI 145


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 249 QPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATG 383
           Q   R L+ +NG++ D+T  +   G G   SAF GKDAT     G
Sbjct: 369 QSKTRPLVLINGVVHDMTGFEHPGGQGLLRSAF-GKDATAAFNGG 412


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 369 GLATGQVAASENDEYDDVSDLGSDEIASAKEWEEQFREKYD 491
           G + G+++  E DEYDD     SDE+ S     E   E  D
Sbjct: 354 GKSQGEISEQEEDEYDDAE---SDEMHSPYSTHEPESEPED 391


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 463 HSLAEAISSEPRSLTSSYSSFSDAATC-PVAKPLVASLPANAEYXXXXXXXXXXLVTSNI 287
           H L EA   + +S  +  S+   +    P+ KP+ A++PA + Y           +  ++
Sbjct: 88  HKLTEAREGKLKSHATGLSTQKTSTLARPIQKPIEATIPAPSPYLFSEPLPSISSLDLDV 147

Query: 286 IPFTAK 269
           +  TA+
Sbjct: 148 LRLTAR 153


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 448 AISSEPRSLTSSYSSFSDAATCPVAKPLVASLPANAEY 335
           A  SE  S +S  SS+SD AT  +        P ++EY
Sbjct: 91  ATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEY 128


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 517 PNLRRRPTMSYFSLNCSSHSLAEAISSEPRSLTSS 413
           PN+R   T+S  +  CS  S +++I++EP S+ +S
Sbjct: 595 PNVRIFDTVSNRNWICSIPSHSDSIAAEPNSVPTS 629


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 282 GIIFDVTRGKRFYGPGGPYSAFAGKDATR-GLATGQVAASENDEYDDV-SDLGSDEIASA 455
           GII D+ + K+F G G  ++  AG   T   LA  Q    +      V S++ S EI   
Sbjct: 51  GIITDLIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKT 110

Query: 456 KEWEEQFR 479
           +   E FR
Sbjct: 111 EALMENFR 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,098
Number of Sequences: 5004
Number of extensions: 47282
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)