Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O24
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...   104   5e-23
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...   104   5e-23
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    66   2e-11
AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical ...    32   0.45 
Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   5.6  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score =  104 bits (250), Expect = 5e-23
 Identities = 53/109 (48%), Positives = 69/109 (63%)
 Frame = +3

Query: 210 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQV 389
           D+TV EL+KYDG + +  +L  +NG I+DVTRGK FYGPG  Y   AG DATR L T   
Sbjct: 49  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 107

Query: 390 AASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLLKLGETPKNY 536
            A  + E+DD + + +DE  +A EWE QF+ KY  VGRL+K      +Y
Sbjct: 108 NA-VSSEWDDHTGISADEQETANEWETQFKFKYLTVGRLVKNSSEKADY 155


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score =  104 bits (250), Expect = 5e-23
 Identities = 53/109 (48%), Positives = 69/109 (63%)
 Frame = +3

Query: 210 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQV 389
           D+TV EL+KYDG + +  +L  +NG I+DVTRGK FYGPG  Y   AG DATR L T   
Sbjct: 64  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 122

Query: 390 AASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLLKLGETPKNY 536
            A  + E+DD + + +DE  +A EWE QF+ KY  VGRL+K      +Y
Sbjct: 123 NA-VSSEWDDHTGISADEQETANEWETQFKFKYLTVGRLVKNSSEKADY 170


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/95 (34%), Positives = 51/95 (53%)
 Frame = +3

Query: 216 TVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAA 395
           T  +L  +DGT+    + LA+ G +++V   K +YGPG  Y  FAG+DATR   TG    
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDF-- 159

Query: 396 SENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVG 500
            E+        L  DE+ S ++W   + ++Y +VG
Sbjct: 160 QESGLIATTHGLSHDELLSIRDWVSFYDKEYPLVG 194


>AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical
           protein Y73E7A.2 protein.
          Length = 463

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +3

Query: 369 GLATGQVAASENDEYDDVSDLGSDE--IASAKEWEEQFREKYDIVGRLLKLG 518
           G   G+ A  + ++ DDV ++ SDE  ++  ++ EE+  E+ +I G+  K+G
Sbjct: 218 GEGKGKAAGEDEEDDDDVEEIPSDEEILSDFEDDEEEPAEELEIPGKSRKIG 269


>Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical
           protein F57B1.7 protein.
          Length = 235

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -3

Query: 481 SLNCSSHSLAEAISSEPRSLTSSYSSFSDAATCPVAKPLVASLP 350
           SLN  +  L  +I++ P+ L SS +S SDA++C  + P   S+P
Sbjct: 35  SLNALNSLLYGSINTSPQPLLSSPTS-SDASSCSPSMPFTPSIP 77


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 387 VAASENDEYDDVSDLGSDEIASAKEWEEQFREKY 488
           +A  E +  +D+SD+  D+  +A+E  E+ RE+Y
Sbjct: 267 LADEEEENSNDISDIDDDDGITAEEQREEERERY 300


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 294 DVTRGKRFYGPGGPYSA--FAGKDATRGLATGQVAASENDEYDDVSDLG 434
           D  R KR Y P GPY +        T   AT   AA +   YD V+D G
Sbjct: 72  DNDREKRSYEPEGPYQSETTTPSTTTSTAATTTEAAEDESGYDFVNDNG 120


>Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 402 NDEYDDVSDLGSDEIASAKEWEEQFREK-YDIVGRLLKLGETPKNYXXXXXXXXKSQ*AN 578
           +D +D   + G D   SAKE+ EQ +EK  D +    K G+  K          K + + 
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSE 229

Query: 579 SW 584
            W
Sbjct: 230 IW 231


>Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 402 NDEYDDVSDLGSDEIASAKEWEEQFREK-YDIVGRLLKLGETPKNYXXXXXXXXKSQ*AN 578
           +D +D   + G D   SAKE+ EQ +EK  D +    K G+  K          K + + 
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSE 229

Query: 579 SW 584
            W
Sbjct: 230 IW 231


>Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 402 NDEYDDVSDLGSDEIASAKEWEEQFREK-YDIVGRLLKLGETPKNYXXXXXXXXKSQ*AN 578
           +D +D   + G D   SAKE+ EQ +EK  D +    K G+  K          K + + 
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSE 229

Query: 579 SW 584
            W
Sbjct: 230 IW 231


>Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 402 NDEYDDVSDLGSDEIASAKEWEEQFREK-YDIVGRLLKLGETPKNYXXXXXXXXKSQ*AN 578
           +D +D   + G D   SAKE+ EQ +EK  D +    K G+  K          K + + 
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEKASDALDSAQKHGDDAKESAQGYFEQAKDKSSE 229

Query: 579 SW 584
            W
Sbjct: 230 IW 231


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 402  NDEYDDVSDLGSDEIASAKEWEEQFREKYDI 494
            +D  DDV     D  ASAK+W   F +K ++
Sbjct: 969  DDTKDDVISFRVDNSASAKKWSAAFADKLEL 999


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 356 FTSKRRVWASRSIKSLASSNIKYNSIHSQKNSSVRLSS 243
           F + ++ WA  S + + S +  YN +++Q  +S +LS+
Sbjct: 768 FVNAKKTWALTSEQGIESLHSWYNKLNAQIRTSAKLST 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,777
Number of Sequences: 27780
Number of extensions: 253582
Number of successful extensions: 793
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)