Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O21
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    45   1e-05
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    31   0.26 
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    29   0.59 
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    28   1.4  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    27   2.4  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    27   2.4  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.2  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   3.2  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   9.6  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   9.6  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   9.6  

>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 29/115 (25%), Positives = 54/115 (46%)
 Frame = +3

Query: 453 FSVIVTGATCDFQLDLSQTNILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIV 632
           FSV     T  F + L+ + + +++   G IA    W  +++  GRK  LLI M+G  I 
Sbjct: 154 FSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIF 213

Query: 633 SVASAFAPNWVFMAVMKFISTSFCSCAQSVTYTLLGESSSETFRDSYMLIMTSVL 797
           +++ A A +   + + +F S  F S   +V      +  S   R + + I  +++
Sbjct: 214 NISVAVAKDIQTIMMCRFFSGFFASAPLTVVAAAFADMYSNKHRGTAITIFAALV 268


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +3

Query: 456 SVIVTGATCDFQLDLSQTNILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVS 635
           ++ V G+     L   Q  ++ S      +  A   G++AD  GRK  LL A     I S
Sbjct: 105 ALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGS 164

Query: 636 VASAFAPNWVFMAVMKFI 689
           V  A + N   M V +FI
Sbjct: 165 VIMAASRNVAMMVVGRFI 182


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
 Frame = +3

Query: 447 FGFSVI---VTGATCDFQLDLSQTNILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMW 617
           FG SVI   +   + D ++     N+  S+  VG          +++  GR+   L+ + 
Sbjct: 116 FGSSVIAGDLEDVSRDLKVGPEVANLSCSLMVVGFGIGPLVISPLSEMIGRRIVYLVTLM 175

Query: 618 GSFIVSVASAFAPNWVFMAVMKFISTSFCSCAQSVTYTLLGESSSETF 761
              ++ +  A APN   + +++F    FC C      TL G   S+ +
Sbjct: 176 IYIVLQIPCALAPNIACLLIVRF----FCGCFGCTPLTLAGGVISDVW 219


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 558 PWGYIADTKGRKTS---LLIAMWGSFIVSV-ASAFAPNWVFMAVMKFISTSFCSCAQSV 722
           P       K RK S   L +  WG FI+ + A+  + N+ + A + F S SFC+  Q V
Sbjct: 144 PLSVTKSRKWRKASYGLLGVFTWGLFIICLSATVLSSNFAWAAFLGF-SASFCAVVQYV 201


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -1

Query: 479 GGSCHDDGEAEHVDGHGQSRHTQRCH*TDAVPSVTSQINSFVIRVMPFIITGLADCPHCG 300
           G +  +   AE  +G+G       C   +   + T+++   VI     ++    +CPHCG
Sbjct: 14  GNAAQNVSTAEDREGNGVQEVESLC--MECGKNGTTKLLLTVIPYFREVVLMSFECPHCG 71

Query: 299 TLPSKAIVVTLISVSILGTHYNTEETQTLNGIKFKLHEIILNV 171
              ++      I        ++ E+ + LN    K  E I+++
Sbjct: 72  FKNAQVQHAETIQPEGSKITFHVEDKEDLNRTVVKSQEAIVSI 114


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 600 LLIAMWGSFIVSVASAFAPNWVF--MAVMKFISTSFCSCAQSVTYTLLGESSSETFRDSY 773
           L +++W   +  +   F P+  F  MA   F +  FC      TY +L   S E F  S 
Sbjct: 180 LYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSS 239

Query: 774 MLIMTSVLDFXL 809
           +++    ++  +
Sbjct: 240 LMLYLDFINLFI 251


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 504 QTNILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVSVASAFAPNW-VFMAVM 680
           Q NI++S+ ++  +  A+P+ Y+    G    L   M     +S+  A   N+   MAV 
Sbjct: 97  QYNIMISIFYIPFVLCAFPFSYLYKRFGAARILPFFMLSFGAMSLCQAAVKNFGGMMAVR 156

Query: 681 KFISTSFCSCAQSVTYTL 734
            F+  +  +    V Y L
Sbjct: 157 WFLGMAESAVLPGVVYYL 174


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +3

Query: 591 KTSLLIAMWGSFIVSVASAFAPNWVFMAVMKFISTSFCSCAQSVTYTLLGESSSETFRDS 770
           K    I +W  ++ S A  F  NW+   ++    T   + A S   TLL   S E+  +S
Sbjct: 306 KNRTSIRLWIDYLYSTAVDFYTNWIQKPILGIFDTIRSNRADS-QITLLQTKSLESDMES 364

Query: 771 YMLIMTSVLDF 803
              +   V+DF
Sbjct: 365 ---LQRMVIDF 372


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 ERHYPYNEAINLAGNGRY 389
           ++H PY E  NL+G  RY
Sbjct: 167 KQHIPYREKKNLSGTARY 184


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 694 VLMNFITAMNTQFGAKALATET 629
           VL+N + A NTQ G  AL+  T
Sbjct: 260 VLLNHLAAANTQLGVLALSATT 281


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 209 HLVFVFLQCYNEC 247
           HL+F FLQC +EC
Sbjct: 246 HLLFSFLQCPDEC 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,937
Number of Sequences: 5004
Number of extensions: 69190
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)