Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O19
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    92   3e-20
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    85   3e-18
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   0.54 
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   5.0  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   5.0  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.7  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    24   8.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   8.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 91.9 bits (218), Expect = 3e-20
 Identities = 44/65 (67%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +2

Query: 50  MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 226
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 227 LPPGL 241
           LPP L
Sbjct: 61  LPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = +2

Query: 50  MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 226
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 227 LPPGL 241
           LPP L
Sbjct: 61  LPPAL 65


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 110 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQ 244
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQ 247


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 33  NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 158
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 133 VLLYFDRFGVFPPRLN*KVFDIFD 62
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 144 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 275
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 157 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 47
           N+   + R L    +F VF   L+   FD+ D+ +HV
Sbjct: 14  NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 65  KDIKDFLIKARRKDAKSVKIKKNPEN 142
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,288
Number of Sequences: 5004
Number of extensions: 17584
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)