Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O17
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.48
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.84
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 29 1.1
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 29 1.1
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 27 4.5
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 4.5
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 5.9
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 26 7.8
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 7.8
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 29.9 bits (64), Expect = 0.48
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 387 SARRNTCGAPTVPPLSRQHPSCRDRARPTLST 482
S R GAP +P L +HPS + R T ST
Sbjct: 415 SVSRKPTGAPAIPKLPPKHPSRQPTVRATPST 446
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.1 bits (62), Expect = 0.84
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 407 WRAYGPALKPSASVLPRPRSSYSLYTVSQAYHYLFRQH 520
W Y PA PS R SS+ YT+SQA + F QH
Sbjct: 130 WGNYNPAFLPS-----RYDSSFHPYTISQAANQPFPQH 162
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 455 RPRSSYSLYTVSQAYHYLFRQHEESLQPLIDEYRQT--TDEQR-SACPPSSLLGNNWFDN 625
+ +++ Y + +Y+ Q +E P +D+ +DE S P S+L F
Sbjct: 89 KQQNNLDFYACIKLVNYIRSQVKEGKTPDLDKLSDILRSDEYMISVLPDDSVL----FSL 144
Query: 626 LQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVKQR 739
+L +EDD L EVE D AE+K +++ +
Sbjct: 145 GDELDSDFEDDNTLEIEVENPADVSKDAEIKKLKLQNQ 182
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 620 DNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSDKRSKNFXVNLXGLIGLHV 799
DN+QD+S F + ++ R +E+ I+ E ASE+ ++S NL G IG +
Sbjct: 658 DNVQDVSPFLKGEEMKRWVMES---EIVFNEKIASEIGTILGRKSYGKITNLSG-IGSNA 713
Query: 800 NGEG 811
N G
Sbjct: 714 NHNG 717
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 545 DEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRK 673
D ++D + + P G N F L EDDQAL K
Sbjct: 436 DTQETSSDSKLAEVKPKGKNGGNRFHELDPFVYIKEDDQALEK 478
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 650 EDDQALRKEVETITDRIIAAEVKASEVKQRSD 745
E++ + K VE TD++ + EVK EV + ++
Sbjct: 229 EENVTVTKPVEVATDQVESKEVKKKEVSETTE 260
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 329 EAEQVSD-FERILNTNAILCERAKKHVWRAYGPALKPSASVL 451
E EQ+S ++LN+N+ E K+ A G ++PS +L
Sbjct: 40 ELEQISPGIRQMLNSNSEFLEECSKYYTIAQGKQMRPSLVLL 81
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 518 HEESLQPLIDEYRQTTDEQRSACPPSSLLGNN 613
H+E ++ L DEY +T D +++ SL+ ++
Sbjct: 329 HKELMKKLSDEYHRTKDAKQNVSKSVSLISSS 360
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 647 YEDDQALRKEVETITDRIIAAEVKASEVKQRSDKR 751
YE D + E ET+T+++ ++K +E Q+ D++
Sbjct: 263 YESDSSNEDESETVTEKL--GDIKINEEVQQKDEQ 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,569
Number of Sequences: 5004
Number of extensions: 51208
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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