Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O17
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 32 0.50
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 32 0.50
09_03_0051 + 11902322-11903125 32 0.67
07_03_1262 - 25273421-25273909,25273966-25274211 30 2.0
08_02_1544 + 27787089-27787172,27787448-27787612,27787741-277878... 29 3.6
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 29 3.6
01_06_0462 + 29561928-29561957,29562101-29562317,29562412-295624... 29 3.6
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 29 4.7
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 29 4.7
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 28 8.2
08_01_0531 - 4604556-4604582,4604829-4604921,4605381-4605572,460... 28 8.2
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 8.2
02_04_0270 - 21439788-21441680 28 8.2
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 32.3 bits (70), Expect = 0.50
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 617 FDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSDKRSKNFXVNLXGLIGLH 796
FD+++D E EDD +E E D E + S+ K++S + K F +N G L
Sbjct: 312 FDDMEDDEEDDEDDDEDEEEEEEDEDEDEDDEEEKSKPKKKSAGKPKYFALNCPGNYWLV 371
Query: 797 VNG 805
V+G
Sbjct: 372 VHG 374
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 32.3 bits (70), Expect = 0.50
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 455 RPRSSYSLYTVSQAYHYLFRQHEESLQPLIDEYRQTTDEQRSACPPS 595
RP + + +VSQ+ + + EE LQ L + TTD S PPS
Sbjct: 346 RPAHHFQIASVSQSLNIPLSELEEKLQMLETSLKDTTDASSSDKPPS 392
>09_03_0051 + 11902322-11903125
Length = 267
Score = 31.9 bits (69), Expect = 0.67
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +2
Query: 374 AILCERAKKHVW--RAYGPALKPSASVLPRPRSSYSLYTVSQAYHYLFRQHEESLQPLID 547
A+L RA++ + R G + ++S L R RSS+S+++ A Y F H ++ +P
Sbjct: 35 AVLSSRARESLSPRRGGGGLARRASSALERVRSSFSIFSFPSASFYAF--HPDAAEP--- 89
Query: 548 EYRQTTDEQRS--ACPPSS 598
R T +RS A PP++
Sbjct: 90 --RTPTPRKRSPVAAPPAA 106
>07_03_1262 - 25273421-25273909,25273966-25274211
Length = 244
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 425 ALKPSASVLPRPRSSYSLYTVSQAYHYLFRQHEESLQPLIDEYRQTTDEQRSACPPSSLL 604
A+ A+VLP + +L + A H +FR +L + D R ++ R + PP +L
Sbjct: 170 AMMAEAAVLPAEAAPEAL--AAAAEHGIFRNTVAALLTMEDVRRGSSTHGRHSLPPLTLP 227
Query: 605 GNNWFDNLQ 631
++W + Q
Sbjct: 228 DSDWLRSFQ 236
>08_02_1544 +
27787089-27787172,27787448-27787612,27787741-27787850,
27788360-27788513,27788643-27788937,27788996-27789798
Length = 536
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 201 YSFDEVPFLNRDNL*NRSPTTRGCVRLSAAEKRRRTNYYYRSGKPNKC 344
YS+ +PF DNL +PT +L ++++R+ Y + P KC
Sbjct: 48 YSYYSLPFCRPDNLTESAPT---LWQLLHGDRQQRSPYQFEMRVPKKC 92
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 593 SSLLGNNWFDN---LQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSDK 748
+S N W D+ L + + E+ + L+ E++ + D+I AE A Q +DK
Sbjct: 313 ASTTANEWKDDADKLMPVKRWLEERRLLQGEIQRLRDKIAMAEKSAKAEAQLNDK 367
>01_06_0462 +
29561928-29561957,29562101-29562317,29562412-29562494,
29563065-29563124,29563526-29563634,29563732-29563784,
29564270-29564350,29564431-29564547
Length = 249
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -1
Query: 625 IIKPVVA*QARRRAGGSLLVRGLAVLIDEGLKRFFVLSE 509
++ +A +ARRRAGG L R LA L DE R F ++E
Sbjct: 51 LLPATLAARARRRAGGRLTFRELADLADE--SRCFSVNE 87
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 433 AVSIRLAATALVLLSLHRKPSVPLSFQTARRISSAPHR*VPPDHGRATIRLP 588
A S R AATA +L + R+P PL+ A +A P G+ + +P
Sbjct: 44 ATSTRFAATAPILRLVQRRPRAPLTAARAASPDAATGARSPSSGGQMLVFVP 95
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 339 KCLTLKGFLILMQYSASARRNTCGAP--TVPPLSRQHPSCRDRARPTLSTP 485
+C+TL ++ QY R C AP T+PPLS HP +LS P
Sbjct: 1416 ECMTLDSLVV--QYLKHQHRQ-CPAPITTLPPLSLLHPHVCPEPSRSLSAP 1463
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 372 MQYSASARRNTCGAPTVPPLSRQHPSCRD 458
M+ SASARR+ P P L+ QHP+ RD
Sbjct: 1 METSASARRSAAPDPKKPRLA-QHPAPRD 28
>08_01_0531 -
4604556-4604582,4604829-4604921,4605381-4605572,
4605800-4606390
Length = 300
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 365 NTNAILCER-AKKHVWRAYGPALKPSASVLPR 457
+ A+LC A+ WRA GP L P+AS+ R
Sbjct: 60 HARALLCRGCARPTPWRAAGPRLGPTASLCER 91
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 423 PPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTKNLFSPSSMSTARPRTSN 575
PPL + HP+ D TP K T TK+ + +S S P T N
Sbjct: 198 PPLEQNHPNNTDVCSQLPKTPQTKSTV--EHETKSNINNTSTSKGAPPTEN 246
>02_04_0270 - 21439788-21441680
Length = 630
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 507 FSDS--TKNLFSPSSMSTARPRTSND 578
FSDS T+N F P ST R RT+ND
Sbjct: 375 FSDSEVTRNGFEPKWRSTTRGRTTND 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,483,920
Number of Sequences: 37544
Number of extensions: 368850
Number of successful extensions: 1285
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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